Hg_chrom3_TN10mRNA_5510
Organism: Heterodera glycines Gene Locus: chr3:6472990-6477936 Feature type: polypeptideProtein Sequence
Length: 980
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.783 | 0.854 | 0.761 | 0.422 | 0.85 | 0.837 | 0.777 | 1.173 | 1.497 | 1.434 | 0.742 | 1.14 | 1.729 | 0.726 | 1.062 | 1.152 | 0.987 | 1.33 | 1.491 | 0.81 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5231
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— | — |
20-44
|
0.978
|
— | — | — | — |
0.000
|
— | — |
0.101
|
0.061
|
0.011
|
0.120
|
0.347
|
0.690
|
0.529
|
0.015
|
0.636
|
0.078
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007690
|
1.000
|
1.000
|
Hsc_gene_15575.t1
|
Hsc_gene_15575.t1
|
— |
Q9XWL9.3 Patched-related protein 18 [Caenorhabditis elegans]
|
KAF7633542.1 SSD domain-containing protein, partial [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0005575_0.876|GO:0110165_0.866|GO:0008150_0.836|GO:0016020_0.819|GO:0071944_0.809|GO:0005886_0.798|GO:0009987_0.689|GO:0051179_0.578|GO:0006810_0.559|GO:0051234_0.559|GO:0032501_0.538
|
IPR000731+265-422+|IPR003392+50-841+|IPR051697+15-869+
|
— |
PF02460+50-841+Patched_family
|
G3DSA:1.20.1640.10:FF:000013+649-846+PaTched_Related_family
|
PTHR10796+15-869+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
853-980
|
1.000
|
1-852
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.739
|
109867.130
|
8.543
|
19.500
|
21.735
|
13.265
|
42.755
|
57.245
|
12.449
|
9.286
|
48.980
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
turquoise
|
407.333
|
465.117
|
153.753
|
146.640
|
1027.526
|
1881.330
|
318.808
|
326.845
|
48.201
|
125.925
|
92.615
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.826
|
-1.802
|
— |
2.777
|
0.889
|
-2.551
|
-2.632
|
— | — | — |
3.225
|
— | — |
No JSON data available for plots.