Hg_chrom3_TN10mRNA_5512
Organism: Heterodera glycines Gene Locus: chr3:6481679-6484771 Feature type: polypeptideProtein Sequence
Length: 370
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.817 | 1.32 | 1.13 | 0.839 | 0.811 | 0.832 | 0.965 | 2.568 | 0.961 | 1.534 | 0.655 | 2.385 | 1.502 | 0.624 | 0.938 | 1.042 | 0.665 | 0.983 | 0.416 | 0.477 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5233
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.661
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.479
|
0.237
|
0.052
|
0.644
|
0.168
|
0.253
|
0.153
|
0.014
|
0.225
|
0.107
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003589
|
1.000
|
2.000
|
Hsc_gene_15573.t1;Hsc_gene_15573.t2
|
Hsc_gene_15573.t1;Hsc_gene_15573.t2
|
— |
Q8BTG7.1 Protein NDRG4 [Mus musculus]
|
KAI1725449.1 ndr family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.872|GO:0005575_0.731|GO:0110165_0.719|GO:0005622_0.655|GO:0005737_0.617|GO:0016020_0.555|GO:0065007_0.553|GO:0050789_0.541|GO:0009987_0.532
|
IPR004142+47-326_52-326+|IPR029058+43-318_54-274+
|
— |
PF03096+52-326+Ndr_family
|
— |
PTHR11034+47-326+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-8
|
1.000
|
9-370
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.626
|
40960.810
|
6.625
|
1.500
|
25.135
|
12.703
|
45.405
|
54.595
|
14.054
|
11.081
|
50.541
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
2695.662
|
17706.102
|
2287.308
|
179.504
|
63.268
|
296.890
|
91.747
|
7348.597
|
128.012
|
1207.481
|
744.852
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-3.184
|
-6.760
|
-3.561
|
-1.536
|
2.246
|
-1.681
|
4.528
|
-6.179
|
-3.351
|
— |
-4.016
|
— | — |
No JSON data available for plots.