Hg_chrom3_TN10mRNA_5516
Organism: Heterodera glycines Gene Locus: chr3:6495250-6501011 Feature type: polypeptideProtein Sequence
Length: 1,056
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.947 | 0.881 | 0.671 | 0.588 | 0.979 | 1.19 | 0.631 | 1.184 | 1.284 | 1.382 | 0.631 | 1.504 | 1.605 | 0.801 | 1.082 | 1.326 | 0.9 | 1.09 | 1.02 | 0.947 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5237
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— |
GRKKPTNKTAEKR,RKKPTNKTAEKRKEN
|
— | — | — | — | — | — |
0.000
|
— | — |
0.140
|
0.102
|
0.012
|
0.125
|
0.348
|
0.657
|
0.469
|
0.026
|
0.612
|
0.066
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007693
|
1.000
|
1.000
|
Hsc_gene_15570.t1
|
Hsc_gene_15570.t1
|
— |
Q9XWL9.3 Patched-related protein 18 [Caenorhabditis elegans]
|
KAI1701901.1 patched family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0005575_0.863|GO:0110165_0.860|GO:0008150_0.828|GO:0016020_0.800|GO:0071944_0.787|GO:0005886_0.780|GO:0009987_0.666|GO:0032501_0.562|GO:0051179_0.560|GO:0005622_0.556|GO:0043226_0.541|GO:0006810_0.535|GO:0051234_0.535|GO:0043229_0.501
|
IPR000731+293-450+|IPR003392+41-875+|IPR051697+8-905+
|
— |
PF02460+41-875+Patched_family
|
G3DSA:1.20.1640.10:FF:000013+682-879+PaTched_Related_family
|
PTHR10796+8-905+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
882-1056
|
1.000
|
1-881
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.700
|
118336.910
|
7.398
|
11.500
|
21.402
|
12.689
|
44.602
|
55.398
|
11.837
|
9.564
|
48.769
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
turquoise
|
485.670
|
495.620
|
266.183
|
140.548
|
445.670
|
1777.979
|
160.630
|
886.291
|
5.529
|
555.814
|
319.978
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.126
|
-1.956
|
-0.813
|
1.635
|
2.012
|
-3.458
|
-1.109
|
-2.320
|
— |
4.918
|
— | — | — |
No JSON data available for plots.