Hg_chrom3_TN10mRNA_5517
Organism: Heterodera glycines Gene Locus: chr3:6500740-6503291 Feature type: polypeptideProtein Sequence
Length: 431
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.079 | 1.403 | 0.97 | 0.64 | 1.74 | 0.833 | 0.635 | 0.812 | 0.928 | 0.847 | 0.809 | 1.092 | 1.096 | 1.115 | 1.657 | 1.094 | 0.723 | 0.844 | 1.071 | 0.682 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5238
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RRKSDESADEGKGEERNRR,RKSDESADEGKGEERNRRH
|
— | — | — | — | — | — |
0.000
|
— | — |
0.291
|
0.258
|
0.008
|
0.553
|
0.070
|
0.308
|
0.457
|
0.038
|
0.238
|
0.085
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007694
|
1.000
|
1.000
|
Hsc_gene_15569.t1
|
Hsc_gene_15569.t1
|
— |
Q3YEC7.2 Rab-like protein 6 [Homo sapiens]
|
KAI1706571.1 ras of complex, roc, domain of DAPkinase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005525
|
GO:0008150_0.956|GO:0009987_0.911|GO:0005575_0.746|GO:0110165_0.741|GO:0016020_0.662|GO:0071944_0.571|GO:0071840_0.566|GO:0005886_0.560
|
IPR027417+52-324_55-242+|IPR040385+1-415+
|
— | — | — |
PTHR14932+1-415+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
306-431
|
1.000
|
1-305
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.633
|
48585.220
|
5.317
|
-6.500
|
30.858
|
9.281
|
52.204
|
47.796
|
15.081
|
15.777
|
51.276
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
343.761
|
577.418
|
487.593
|
315.615
|
276.870
|
351.860
|
621.370
|
342.054
|
360.781
|
118.577
|
222.378
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.474
|
-1.008
|
-0.518
|
-0.221
|
0.360
|
0.831
|
— |
1.004
|
— | — | — | — | — |
No JSON data available for plots.