Hg_chrom3_TN10mRNA_5518
Organism: Heterodera glycines Gene Locus: chr3:6503517-6505861 Feature type: polypeptideProtein Sequence
Length: 404
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.72 | 0.921 | 1.53 | 0.597 | 1.114 | 0.762 | 0.471 | 1.114 | 0.99 | 1.003 | 0.825 | 1.456 | 1.994 | 0.714 | 1.768 | 1.202 | 0.852 | 0.75 | 1.333 | 1.238 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5239
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKRRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.716
|
0.241
|
0.007
|
0.470
|
0.099
|
0.082
|
0.047
|
0.053
|
0.064
|
0.048
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007695
|
1.000
|
1.000
|
Hsc_gene_15568.t1
|
Hsc_gene_15568.t1
|
— |
O76612.3 BTB and MATH domain-containing protein 47 [Caenorhabditis elegans]
|
KAF7637831.1 BTB domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
— |
IPR000210+163-263_166-232_166-260+|IPR011333+165-291_166-261+
|
SM00225+163-263+
|
PF00651+166-260+BTB/POZ_domain
|
— |
PTHR22744+166-325+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
368-404
|
1.000
|
1-367
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.548
|
47325.260
|
6.588
|
0.500
|
31.436
|
15.347
|
51.980
|
48.020
|
16.337
|
15.099
|
46.535
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
red
|
1028.962
|
968.180
|
1079.053
|
882.986
|
1047.104
|
1033.074
|
1380.538
|
1423.822
|
617.467
|
1108.074
|
897.814
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.270
|
-0.181
|
0.214
|
— |
0.428
|
0.359
|
— | — | — | — | — | — |
No JSON data available for plots.