SCN Proteipedia

Hg_chrom3_TN10mRNA_5519

Organism: Heterodera glycines Gene Locus: chr3:6512570-6514889 Feature type: polypeptide

Protein Sequence

Length: 508

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.076	0.641	0.465	0.611	0.525	0.959	0.773	0.492	1.531	1.729	0.477	1.853	2.187	1.06	0.924	1.181	0.774	1.163	1.666	0.753	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5240	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	6-pJ2_J3_J4_Male	0.973

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane	—	KRKR	—	—	—	—	—	—	0.000	—	—	0.077	0.120	0.017	0.100	0.344	0.470	0.279	0.072	0.726	0.101

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007696	1.000	1.000	Hsc_gene_5690.t1	Hsc_gene_5690.t1	—	—	KAI1723609.1 major facilitator superfamily domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0022857\|GO:0055085	GO:0008150_0.952\|GO:0005575_0.920\|GO:0110165_0.911\|GO:0009987_0.899\|GO:0016020_0.883\|GO:0003674_0.860\|GO:0006810_0.853\|GO:0051179_0.853\|GO:0051234_0.853\|GO:0055085_0.816\|GO:0005622_0.791\|GO:0005737_0.791\|GO:0005215_0.764\|GO:0022857_0.764\|GO:0043226_0.749\|GO:0006811_0.740\|GO:0034220_0.740\|GO:0098660_0.733\|GO:0043227_0.730\|GO:0043229_0.730\|GO:0005773_0.723\|GO:0043231_0.723\|GO:0015075_0.703\|GO:0015318_0.695\|GO:0015698_0.693\|GO:0098661_0.689\|GO:0006820_0.687\|GO:0098656_0.686\|GO:0006821_0.683\|GO:0015267_0.681\|GO:0022803_0.681\|GO:1902476_0.681\|GO:0005216_0.676\|GO:0015103_0.668\|GO:0008509_0.666\|GO:0005253_0.661\|GO:0015108_0.661\|GO:0005254_0.658\|GO:0071944_0.611\|GO:0005886_0.594\|GO:0000323_0.570\|GO:0005764_0.559	IPR011701+46-367_408-501+\|IPR036259+33-490_34-501+\|IPR051068+24-496+	—	PF07690+46-367_408-501+Major_Facilitator_Superfamily	—	PTHR23510+24-496+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-13	1.000	14-508	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.825	56233.390	9.151	12.500	14.370	13.583	33.858	66.142	8.661	5.709	49.016

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	turquoise	306.832	20.041	112.780	463.279	816.197	171.452	254.717	482.841	4.146	468.789	269.656

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	2.262	4.394	2.149	0.785	-2.236	0.581	1.378	-0.777	-7.008	7.072	—	—	—

No JSON data available for plots.

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