Hg_chrom3_TN10mRNA_5520
Organism: Heterodera glycines Gene Locus: chr3:6515690-6516822 Feature type: polypeptideProtein Sequence
Length: 164
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.418 | 0.851 | 0.554 | 0.21 | 2.337 | 1.563 | 0.798 | 0.61 | 1.22 | 0.824 | 1.478 | 1.076 | 1.186 | 0.586 | 0.747 | 1.307 | 0.4 | 0.647 | 0.469 | 0.538 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5241
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_5691
|
— |
20-Not_Clustered
|
0.734
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-23
|
0.973
|
1.000
|
0.000
|
0.000
|
0.297
|
0.459
|
0.032
|
0.364
|
0.137
|
0.015
|
0.029
|
0.020
|
0.115
|
0.949
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007697
|
1.000
|
1.000
|
Hsc_gene_5691.t1
|
Hsc_gene_5691.t1
|
— | — |
AVA09651.1 putative effector protein [Heterodera avenae]
|
MCF6339638
|
0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.935|GO:0110165_0.930|GO:0003674_0.813|GO:0005488_0.813|GO:0044877_0.668|GO:0019863_0.650|GO:0019864_0.650|GO:0019865_0.650|GO:0005576_0.615|GO:0005615_0.591
|
IPR003677+48-150+|IPR052823+3-154+
|
— |
PF02520+48-150+SXP/RAL-2_family_protein_Ani_s_5-like,_metal-binding_domain
|
— |
PTHR21593+3-154+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
76-164
|
1.000
|
1-75
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.546
|
18083.210
|
4.848
|
-5.000
|
31.707
|
7.927
|
53.049
|
46.951
|
14.634
|
17.073
|
45.122
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
2234.597
|
2096.069
|
3031.359
|
1472.000
|
3564.698
|
4260.127
|
575.950
|
2211.797
|
644.692
|
2838.342
|
1898.206
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.304
|
-0.647
|
-0.934
|
1.244
|
— |
-2.886
|
-1.056
|
-1.804
|
— | — | — | — | — |