Hg_chrom3_TN10mRNA_5524
Organism: Heterodera glycines Gene Locus: chr3:6549542-6551072 Feature type: polypeptideProtein Sequence
Length: 334
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.487 | 1.184 | 0.49 | 0.413 | 0.549 | 1.382 | 0.749 | 2.246 | 1.397 | 1.74 | 0.726 | 0.704 | 2.495 | 0.518 | 0.733 | 1.155 | 0.982 | 0.907 | 2.764 | 0.969 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5245
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.021
|
— | — |
0.087
|
0.083
|
0.011
|
0.074
|
0.895
|
0.198
|
0.544
|
0.007
|
0.222
|
0.031
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003592
|
2.000
|
1.000
|
Hsc_gene_5693.t1
|
Hsc_gene_5693.t1
|
— |
Q5CZ37.1 Acyl-coenzyme A diphosphatase FITM2 [Caenorhabditis elegans]
|
KAI1724720.1 inositol phospholipid synthesis and fat-storage-inducing TM domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005789|GO:0010945|GO:0019915|GO:0034389
|
GO:0008150_0.950|GO:0009987_0.903|GO:0051179_0.692|GO:0071840_0.628|GO:0016043_0.624|GO:0006996_0.599|GO:0034389_0.577|GO:0033036_0.562|GO:0065007_0.558|GO:0010876_0.554|GO:0051235_0.551|GO:0019915_0.541|GO:0050789_0.537|GO:0005575_0.515|GO:0110165_0.510
|
IPR019388+46-320_119-314+|IPR046401+72-332+
|
— |
PF10261+119-314+Fat_storage-inducing_transmembrane_protein
|
— |
PTHR23129+46-320+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-334
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.824
|
38749.780
|
9.559
|
15.500
|
18.862
|
20.359
|
43.413
|
56.587
|
12.874
|
5.988
|
42.216
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
52.556
|
7.884
|
7.981
|
10.462
|
13.723
|
13.088
|
136.787
|
115.467
|
8.284
|
109.196
|
65.948
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
3.390
|
3.035
|
0.384
|
-3.769
|
— | — | — | — |
No JSON data available for plots.