Hg_chrom3_TN10mRNA_5526
Organism: Heterodera glycines Gene Locus: chr3:6560254-6563985 Feature type: polypeptideProtein Sequence
Length: 675
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.758 | 0.724 | 1.374 | 1.022 | 1.086 | 0.798 | 0.705 | 1.111 | 1.053 | 1.542 | 0.92 | 0.523 | 1.605 | 0.228 | 1.33 | 1.418 | 0.826 | 1.1 | 1.254 | 0.479 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5247
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRPR,KRYQKKLRKL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.552
|
0.152
|
0.004
|
0.470
|
0.047
|
0.061
|
0.060
|
0.046
|
0.025
|
0.056
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003591
|
2.000
|
1.000
|
Hsc_gene_5692.t1
|
Hsc_gene_5692.t1
|
— |
Q9UNX4.1 WD repeat-containing protein 3 [Homo sapiens]
|
KAH7719399.1 Protein F13H8.2 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.855|GO:0110165_0.855|GO:0008150_0.832|GO:0016020_0.762|GO:0005622_0.745|GO:0043226_0.697|GO:0043229_0.666|GO:0043227_0.665|GO:0009987_0.643|GO:0043231_0.623|GO:0005737_0.525
|
IPR001680+30-65_68-107_72-107_75-108_110-149_116-148_117-158_152-191_399-439_410-436_485-525_539-577_580-619_586-618_587-628_622-664_623-662+|IPR015943+2-192_393-533_534-663+|IPR019775+94-108+|IPR020472+94-108_136-150_606-620+|IPR036322+32-662+|IPR051570+9-661+
|
SM00320+30-65_68-107_110-149_152-191_399-439_485-525_539-577_580-619_622-664+
|
PF00400+72-107_116-148_410-436_586-618_623-662+WD_domain,_G-beta_repeat
|
G3DSA:2.130.10.10:FF:000157+455-647+WD_repeat_domain_3
|
PTHR19853+9-661+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-675
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.514
|
75923.310
|
6.247
|
-2.500
|
28.889
|
11.259
|
50.074
|
49.926
|
14.815
|
14.074
|
49.481
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
98.731
|
76.145
|
39.220
|
42.214
|
34.784
|
26.595
|
160.632
|
145.372
|
180.830
|
99.466
|
134.336
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.186
|
-0.989
|
— | — | — |
2.606
|
2.349
|
— | — | — | — | — | — |
No JSON data available for plots.