Hg_chrom3_TN10mRNA_5528
Organism: Heterodera glycines Gene Locus: chr3:6565948-6567766 Feature type: polypeptideProtein Sequence
Length: 482
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.989 | 1.351 | 1.132 | 0.429 | 0.864 | 1.117 | 0.889 | 0.83 | 1.475 | 1.682 | 0.912 | 1.342 | 1.037 | 0.638 | 0.974 | 1.334 | 0.51 | 1.006 | 0.319 | 0.244 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5249
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.445
|
0.537
|
0.019
|
0.598
|
0.165
|
0.105
|
0.138
|
0.078
|
0.124
|
0.189
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003593
|
2.000
|
1.000
|
Hsc_gene_5694.t1
|
Hsc_gene_5694.t1
|
— |
Q0VGK3.1 Glycerate kinase [Rattus norvegicus]
|
KAH7713333.1 MOFRL family protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008887
|
GO:0005575_0.713|GO:0110165_0.708|GO:0003674_0.695|GO:0005622_0.638|GO:0005737_0.588|GO:0003824_0.580|GO:0008150_0.557|GO:0016740_0.537|GO:0016772_0.516|GO:0016301_0.513|GO:0016020_0.510
|
IPR007835+344-471+|IPR025286+8-246+|IPR037035+265-480+|IPR038614+20-264+|IPR039760+3-478+
|
— |
PF05161+344-471+MOFRL_family|PF13660+8-246+Domain_of_unknown_function_(DUF4147)
|
— |
PTHR12227+3-478+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-482
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.772
|
52266.930
|
6.694
|
1.000
|
23.859
|
6.639
|
46.473
|
53.527
|
12.448
|
11.411
|
51.660
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
182.012
|
205.109
|
129.876
|
136.861
|
105.113
|
101.560
|
160.022
|
195.698
|
87.737
|
342.659
|
233.407
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.888
|
-0.721
|
— |
-0.412
|
— |
0.665
|
0.841
|
— | — | — | — | — | — |
No JSON data available for plots.