Hg_chrom3_TN10mRNA_5529
Organism: Heterodera glycines Gene Locus: chr3:6569706-6571526 Feature type: polypeptideProtein Sequence
Length: 318
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.731 | 1.389 | 1.086 | 0.651 | 0.786 | 1.209 | 0.936 | 0.0 | 1.118 | 1.062 | 1.239 | 0.925 | 1.747 | 0.726 | 0.385 | 1.168 | 0.825 | 1.429 | 1.451 | 1.017 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5250
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— | — | — | — | — | — |
1-20
|
0.976
|
1.000
|
1.000
|
1.000
|
0.138
|
0.016
|
0.020
|
0.217
|
0.533
|
0.773
|
0.544
|
0.019
|
0.654
|
0.042
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007698
|
1.000
|
1.000
|
Hsc_gene_5696.t1
|
Hsc_gene_5696.t1
|
— |
Q9TYW1.1 V-type proton ATPase subunit S1 [Caenorhabditis elegans]
|
KAI1726282.1 vacuolar ATP synthase subunit s1 (ATP6S1) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.916|GO:0110165_0.916|GO:0016020_0.865|GO:0008150_0.822|GO:0009987_0.757|GO:0005622_0.593|GO:0005737_0.593|GO:0043226_0.561|GO:0043229_0.546|GO:0043227_0.539|GO:0043231_0.534|GO:0071944_0.522|GO:0071840_0.520|GO:0016043_0.518|GO:0005886_0.513
|
IPR008388+43-317+|IPR046756+268-306+
|
— |
PF20520+268-306+V0_complex_accessory_subunit_Ac45/VOA1_transmembrane_domain
|
— |
PTHR12471+43-317+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-318
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.767
|
35140.060
|
5.206
|
-2.000
|
20.755
|
11.635
|
44.654
|
55.346
|
10.063
|
10.692
|
54.403
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
154.747
|
41.808
|
51.350
|
39.333
|
46.783
|
46.912
|
237.984
|
422.004
|
125.196
|
250.806
|
196.973
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
2.353
|
3.065
|
-0.684
|
— | — | — | — | — |