Hg_chrom3_TN10mRNA_5530
Organism: Heterodera glycines Gene Locus: chr3:6571871-6574079 Feature type: polypeptideProtein Sequence
Length: 319
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.656 | 1.458 | 1.368 | 0.54 | 0.575 | 0.723 | 0.522 | 1.567 | 0.906 | 1.44 | 0.332 | 1.291 | 1.48 | 0.482 | 1.471 | 1.523 | 0.976 | 1.235 | 0.723 | 1.567 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5251
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
endoplasmic_reticulum
|
chloroplast
|
— |
22-46
|
0.966
|
8-72
|
0.867
|
1-22
|
0.953
|
0.802
|
0.000
|
0.000
|
0.079
|
0.351
|
0.015
|
0.260
|
0.690
|
0.167
|
0.162
|
0.073
|
0.172
|
0.481
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007699
|
1.000
|
1.000
|
Hsc_gene_5698.t1
|
Hsc_gene_5698.t1;Hsc_gene_5698.t2
|
— |
Q8T4E1.1 Putative GPI-anchor transamidase [Drosophila melanogaster]
|
KAI1718983.1 peptidase c13 family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003923|GO:0006508|GO:0008233|GO:0016255|GO:0042765
|
GO:0005575_0.856|GO:0110165_0.853|GO:0016020_0.731|GO:0005622_0.728|GO:0005737_0.697|GO:0043226_0.681|GO:0043229_0.659|GO:0043227_0.651|GO:0043231_0.647|GO:0003674_0.630|GO:0071944_0.620|GO:0005886_0.570|GO:0005773_0.561|GO:0008150_0.530|GO:0003824_0.524
|
IPR001096+1-243_37-252_38-62_63-92_112-127_139-158_188-204+|IPR028361+1-318_11-304+
|
— |
PF01650+37-252+Peptidase_C13_family
|
G3DSA:3.40.50.1460:FF:000016+33-311+GPI-anchor_transamidase,_putative
|
PTHR48067+11-304+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-319
|
7w72_K
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.649
|
36397.960
|
6.494
|
0.000
|
23.511
|
14.734
|
49.216
|
50.784
|
12.539
|
10.972
|
52.665
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
turquoise
|
166.125
|
86.028
|
49.484
|
48.353
|
52.782
|
47.919
|
239.166
|
177.892
|
68.858
|
412.047
|
264.966
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.029
|
-0.968
|
— | — | — |
2.332
|
1.789
|
0.571
|
— | — | — | — | — |