SCN Proteipedia

Hg_chrom3_TN10mRNA_5531

Organism: Heterodera glycines Gene Locus: chr3:6574295-6578489 Feature type: polypeptide

Protein Sequence

Length: 773

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.903	0.782	1.082	0.625	1.207	1.194	0.678	0.841	1.207	1.434	0.921	1.446	0.934	1.045	1.478	0.979	0.785	1.117	0.597	0.419	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5252	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Eggs_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	mitochondrial_transit_peptide	mitochondrion	—	KKRRKYAETGSMKKQKG,KRSELRQRYETARKEKI,WAKFEEKKRRKYAETGSMKKQK	15-35	0.995	1-51	0.999	—	—	0.000	—	—	0.140	0.909	0.120	0.216	0.053	0.054	0.056	0.031	0.035	0.026

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007700	1.000	1.000	Hsc_gene_5700.t1	Hsc_gene_5699.t1;Hsc_gene_5700.t1	—	P46199.2 Translation initiation factor IF-2, mitochondrial [Homo sapiens]	KAI6210889.1 Tr-type G domain-containing protein [Aphelenchoides besseyi]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003924\|GO:0005525	GO:0005575_0.853\|GO:0110165_0.837\|GO:0005622_0.736\|GO:0008150_0.706\|GO:0016020_0.705\|GO:0003674_0.683\|GO:0005737_0.660\|GO:0009987_0.645\|GO:0005488_0.621\|GO:0043226_0.578\|GO:0043229_0.558\|GO:0008152_0.533\|GO:0043227_0.514\|GO:0044238_0.514\|GO:0044237_0.509	IPR000795+186-359_190-203_190-350_242-252_258-269_294-303+\|IPR005225+191-348+\|IPR009000+364-443+\|IPR015760+60-760+\|IPR023115+515-614+\|IPR027417+182-354_183-361+\|IPR036925+519-624_519-629+\|IPR044145+365-459+\|IPR053905+366-434+	—	PF00009+190-350+Elongation_factor_Tu_GTP_binding_domain\|PF11987+515-614+Translation-initiation_factor_2\|PF22042+366-434+Elongation_factor_G_domain_2	G3DSA:3.40.50.10050:FF:000001+500-626+Translation_initiation_factor_IF-2\|G3DSA:3.40.50.300:FF:000019+183-361+Translation_initiation_factor_IF-2	PTHR43381+60-760+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	773-773	1.000	1-772	4b48_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.675	86243.160	7.566	7.500	28.202	7.245	47.865	52.135	15.006	13.195	49.030

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey	1353.373	2269.750	1811.912	1396.260	1248.188	947.192	2410.850	1315.963	615.068	1184.662	940.550

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.555	-0.838	-0.267	-0.194	-0.384	1.360	0.368	1.018	—	—	—	—	—

No JSON data available for plots.

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