Hg_chrom3_TN10mRNA_5533
Organism: Heterodera glycines Gene Locus: chr3:6581517-6586358 Feature type: polypeptideProtein Sequence
Length: 1,060
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.867 | 1.382 | 1.046 | 0.618 | 0.896 | 1.209 | 0.595 | 1.887 | 1.069 | 1.045 | 1.058 | 1.221 | 0.97 | 1.07 | 1.482 | 1.294 | 0.742 | 0.829 | 0.435 | 0.777 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5254
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RKSK,VRKISGRRRRI,KRRKHKNYISKRKGNK,KKQQPIVLIPKRRKHKN
|
17-56
|
0.927
|
3-28
|
0.968
|
— | — |
0.001
|
— | — |
0.466
|
0.148
|
0.032
|
0.677
|
0.146
|
0.081
|
0.131
|
0.084
|
0.278
|
0.106
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003594
|
1.000
|
2.000
|
Hsc_gene_5702.t1;Hsc_gene_5702.t2
|
Hsc_gene_5702.t1;Hsc_gene_5702.t2
|
— |
P49760.1 Dual specificity protein kinase CLK2 [Homo sapiens]
|
KAI1718342.1 protein kinase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0008150_0.831|GO:0003674_0.789|GO:0009987_0.787|GO:0005575_0.770|GO:0110165_0.754|GO:0005622_0.709|GO:0065007_0.696|GO:0050789_0.687|GO:0050794_0.659|GO:0003824_0.637|GO:0140096_0.637|GO:0008152_0.636|GO:0043170_0.636|GO:0044238_0.622|GO:0016740_0.616|GO:0044237_0.616|GO:0016020_0.610|GO:0043226_0.610|GO:0043229_0.589|GO:0016772_0.570|GO:0016301_0.554|GO:0016773_0.552|GO:0004672_0.551|GO:0043227_0.511
|
IPR000719+704-1023+|IPR008271+828-840+|IPR011009+691-1030+|IPR017441+710-735+|IPR051175+488-1031+
|
SM00220+704-1023+
|
PF00069+704-1023+Protein_kinase_domain
|
— |
PTHR45646+488-1031+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
175-616;1055-1060
|
2.000
|
1-174;617-1054
|
6fyl_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.911
|
119348.960
|
9.722
|
53.000
|
29.151
|
10.472
|
53.396
|
46.604
|
18.019
|
11.132
|
50.566
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
turquoise
|
1130.536
|
1166.771
|
2172.279
|
1271.168
|
1230.615
|
1405.734
|
1732.689
|
2375.705
|
335.879
|
436.077
|
393.135
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.667
|
— |
-0.664
|
— |
0.206
|
0.312
|
0.653
|
-0.313
|
— | — | — | — | — |
No JSON data available for plots.