Hg_chrom3_TN10mRNA_5535
Organism: Heterodera glycines Gene Locus: chr3:6591190-6593390 Feature type: polypeptideProtein Sequence
Length: 562
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.91 | 1.283 | 0.647 | 0.491 | 0.623 | 3.513 | 0.614 | 1.246 | 0.593 | 1.106 | 0.593 | 1.465 | 0.989 | 1.232 | 0.799 | 1.627 | 1.021 | 0.647 | 0.137 | 0.994 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5256
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.901
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — |
29-52
|
0.968
|
— | — |
0.000
|
— | — |
0.499
|
0.176
|
0.007
|
0.692
|
0.125
|
0.077
|
0.125
|
0.022
|
0.088
|
0.030
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007703
|
1.000
|
1.000
|
Hsc_gene_5704.t1
|
Hsc_gene_5704.t1
|
— |
B4IX08.1 Protein alan shepard [Drosophila grimshawi]
|
KAI3415699.1 RNA-binding motif, single-stranded-interacting protein 2, variant 2 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723|GO:1990904
|
GO:0008150_0.897|GO:0009987_0.836|GO:0005575_0.820|GO:0110165_0.817|GO:0003674_0.721|GO:0005488_0.721|GO:0005622_0.705|GO:0097159_0.619|GO:0003676_0.616|GO:0065007_0.607|GO:0050789_0.587|GO:0008152_0.575|GO:0043170_0.575|GO:0016020_0.574|GO:0050794_0.573|GO:0009058_0.560|GO:0009059_0.560|GO:0010467_0.560|GO:0044237_0.560|GO:0044249_0.560|GO:0043226_0.535|GO:0005737_0.531|GO:0003723_0.527|GO:0043229_0.502
|
IPR000504+125-198_126-194_127-188_204-283_205-279_206-272+|IPR002343+125-140_209-224_224-236_264-281+|IPR012677+46-191_192-290+|IPR035979+84-186_197-291+|IPR050502+196-296+
|
SM00360+126-194_205-279+
|
PF00076+127-188_206-272+RNA_recognition_motif
|
G3DSA:3.30.70.330:FF:000012+121-203+RNA-binding_motif,_single-stranded-interacting_protein_3_isoform_1
|
PTHR48025+196-296+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-132;501-562
|
1.000
|
133-500
|
7c36_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.883
|
62174.080
|
8.107
|
10.000
|
17.616
|
9.609
|
54.448
|
45.552
|
10.320
|
7.295
|
51.779
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
yellow
|
1982.857
|
1781.642
|
1303.220
|
964.809
|
889.284
|
1403.977
|
2165.601
|
2833.326
|
1302.958
|
3444.582
|
2526.743
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.681
|
-1.022
|
-0.325
|
-0.149
|
0.673
|
0.636
|
0.912
|
— | — | — | — | — | — |
No JSON data available for plots.