SCN Proteipedia

Hg_chrom3_TN10mRNA_5536

Organism: Heterodera glycines Gene Locus: chr3:6603658-6609103 Feature type: polypeptide

Protein Sequence

Length: 1,232

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.897	1.208	1.092	0.924	1.109	0.978	0.618	1.218	0.83	1.261	0.996	1.528	1.398	0.89	1.242	1.252	0.945	0.726	0.687	0.621	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5257	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	12-Not_Clustered	0.536

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	ATKRKRRDAAKEAKER,KRRRVILSSDDEKKKMM	—	—	—	—	—	—	0.000	—	—	0.908	0.142	0.007	0.332	0.018	0.058	0.038	0.019	0.048	0.014

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007704	1.000	1.000	Hsc_gene_5713.t1	Hsc_gene_5713.t1	—	P54276.3 DNA mismatch repair protein Msh6 [Mus musculus]	KAI1725645.1 mutS domain V domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005524\|GO:0006298\|GO:0030983\|GO:0140664	GO:0008150_0.921\|GO:0009987_0.867\|GO:0005575_0.761\|GO:0110165_0.761\|GO:0050896_0.749\|GO:0008152_0.728\|GO:0043170_0.728\|GO:0044238_0.722\|GO:0051716_0.708\|GO:0006139_0.687\|GO:0003674_0.685\|GO:0005622_0.675\|GO:0090304_0.673\|GO:0006950_0.650\|GO:0016020_0.625\|GO:0033554_0.619\|GO:0006259_0.617\|GO:0006974_0.601\|GO:0065007_0.574\|GO:0043226_0.570\|GO:0050789_0.555\|GO:0043229_0.550\|GO:0005488_0.545\|GO:0006281_0.531\|GO:0016043_0.511\|GO:0071840_0.511\|GO:0043227_0.502	IPR000432+1025-1220_1028-1220_1106-1122+\|IPR007695+297-383+\|IPR007696+653-963_654-1001+\|IPR007860+435-572+\|IPR007861+834-923+\|IPR016151+252-406_285-381+\|IPR017261+1-1231+\|IPR027417+973-1227_984-1220+\|IPR036187+620-969+\|IPR036678+410-573_414-604+\|IPR045076+300-1224+	SM00533+654-1001+\|SM00534+1025-1220+	PF00488+1028-1220+MutS_domain_V\|PF01624+297-383+MutS_domain_I\|PF05188+435-572+MutS_domain_II\|PF05190+834-923+MutS_family_domain_IV\|PF05192+653-963+MutS_domain_III	G3DSA:1.10.1420.10:FF:000005+810-940+DNA_mismatch_repair_protein	PTHR11361+300-1224+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-271	1.000	272-1232	8r7e_E	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.744	138264.690	7.436	15.000	27.760	10.471	51.299	48.701	15.097	12.662	50.731

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	yellow	1765.076	1690.514	1751.044	1632.053	1838.298	1420.849	2317.692	1264.753	2494.584	1383.067	1859.431

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.179	-0.188	—	0.140	-0.357	0.716	-0.273	1.016	—	—	—	—	—

No JSON data available for plots.

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