Hg_chrom3_TN10mRNA_5537
Organism: Heterodera glycines Gene Locus: chr3:6609220-6612338 Feature type: polypeptideProtein Sequence
Length: 823
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.017 | 1.046 | 0.906 | 0.712 | 1.175 | 0.997 | 0.55 | 1.58 | 1.242 | 1.609 | 0.773 | 1.429 | 1.283 | 0.865 | 1.24 | 1.111 | 0.737 | 0.847 | 0.935 | 0.5 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5258
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.506
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.704
|
0.110
|
0.015
|
0.469
|
0.092
|
0.233
|
0.130
|
0.075
|
0.085
|
0.079
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003595
|
2.000
|
1.000
|
Hsc_gene_5715.t1
|
Hsc_gene_5715.t1
|
— |
Q7ZU29.1 Nuclear pore complex protein Nup93 [Danio rerio]
|
KAF7639753.1 Nuclear pore protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005643|GO:0017056
|
GO:0005575_0.906|GO:0110165_0.900|GO:0005622_0.821|GO:0005737_0.761|GO:0016020_0.716|GO:0008150_0.682|GO:0043226_0.658|GO:0071944_0.656|GO:0005886_0.655|GO:0043229_0.629|GO:0009987_0.622|GO:0043227_0.617|GO:0043231_0.596|GO:0005773_0.519|GO:0012505_0.512
|
IPR007231+129-820_254-813+
|
— |
PF04097+254-813+Nup93/Nic96
|
— |
PTHR11225+129-820+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
70-128
|
2.000
|
1-69;129-823
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.610
|
92470.150
|
6.893
|
6.000
|
26.367
|
10.693
|
47.023
|
52.977
|
14.338
|
12.029
|
47.266
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
greenyellow
|
1326.293
|
1376.873
|
1020.949
|
1373.081
|
1349.755
|
1098.241
|
1466.756
|
1400.612
|
752.097
|
1831.110
|
1368.676
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.661
|
-0.141
|
0.536
|
— |
-0.283
|
0.428
|
0.248
|
0.208
|
— | — | — | — | — |
No JSON data available for plots.