SCN Proteipedia

Hg_chrom3_TN10mRNA_5538

Organism: Heterodera glycines Gene Locus: chr3:6612421-6615188 Feature type: polypeptide

Protein Sequence

Length: 373

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.779	1.185	0.829	0.277	1.296	1.512	0.638	2.011	1.668	1.051	0.65	1.262	0.819	1.289	1.532	0.804	0.835	0.853	0.206	1.262	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5259	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Not_Clustered	0.885

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	nucleus	—	RRLEEEKAQRQERIRQK	—	—	—	—	—	—	0.000	—	—	0.697	0.174	0.038	0.459	0.121	0.078	0.103	0.104	0.050	0.035

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001958	3.000	1.000	Hsc_gene_5716.t1	Hsc_gene_5716.t1	—	Q17QZ4.1 Transcription factor Dp-1 [Bos taurus]	KAI3415704.1 Transcription factor Dp-2 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	Yes	GO:0005667\|GO:0051726	GO:0008150_0.946\|GO:0009987_0.891\|GO:0003674_0.884\|GO:0005575_0.882\|GO:0110165_0.874\|GO:0065007_0.854\|GO:0005622_0.845\|GO:0050789_0.843\|GO:0005488_0.835\|GO:0008152_0.830\|GO:0050794_0.824\|GO:0044238_0.812\|GO:0044237_0.801\|GO:0043170_0.791\|GO:0009058_0.789\|GO:0019222_0.772\|GO:0044249_0.771\|GO:0006139_0.765\|GO:0009059_0.764\|GO:0010467_0.761\|GO:0031323_0.761\|GO:0060255_0.754\|GO:0034654_0.745\|GO:0090304_0.742\|GO:0009889_0.738\|GO:0010468_0.737\|GO:0010556_0.737\|GO:0031326_0.737\|GO:0141187_0.736\|GO:0016020_0.720\|GO:0043226_0.710\|GO:0043229_0.697\|GO:0043227_0.662\|GO:0080090_0.655\|GO:0016070_0.639\|GO:0043231_0.639\|GO:0032774_0.633\|GO:0019219_0.621\|GO:0051252_0.617\|GO:0005634_0.613\|GO:0006351_0.612\|GO:0006355_0.611\|GO:2001141_0.611\|GO:0005515_0.598\|GO:0032991_0.593\|GO:0048518_0.590\|GO:0048522_0.579\|GO:0097159_0.542\|GO:0005737_0.522\|GO:0003676_0.516	IPR014889+38-142_40-184_41-176+\|IPR015648+27-200+\|IPR037241+40-181+\|IPR038168+36-184+	SM01138+40-184+	PF08781+41-176+Transcription_factor_DP	—	PTHR12548+27-200+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	273-373	1.000	1-272	5tuv_D	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.681	42589.230	7.204	5.500	28.150	11.528	49.866	50.134	15.818	12.332	45.576

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey60	1752.416	2060.302	2527.795	1258.138	1268.630	1195.718	1423.289	2184.343	2144.715	1588.954	1827.137

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-0.849	-0.899	—	—	0.260	0.764	-0.477	—	—	—	—	—

No JSON data available for plots.

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