Hg_chrom3_TN10mRNA_5540
Organism: Heterodera glycines Gene Locus: chr3:6619399-6622222 Feature type: polypeptideProtein Sequence
Length: 508
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.87 | 1.099 | 1.074 | 0.475 | 1.247 | 1.615 | 0.773 | 0.886 | 1.181 | 0.665 | 1.491 | 1.969 | 1.258 | 0.644 | 0.884 | 1.547 | 0.936 | 0.597 | 0.909 | 0.347 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5261
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.821
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.276
|
0.286
|
0.014
|
0.678
|
0.307
|
0.309
|
0.532
|
0.046
|
0.202
|
0.031
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001959
|
2.000
|
2.000
|
Hsc_gene_5718.t1;Hsc_gene_5718.t2
|
Hsc_gene_5718.t1;Hsc_gene_5718.t2
|
— |
Q9NP61.1 ADP-ribosylation factor GTPase-activating protein 3 [Homo sapiens]
|
KAF7633543.1 Arf-GAP domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005096
|
GO:0005575_0.860|GO:0110165_0.859|GO:0005622_0.783|GO:0008150_0.692|GO:0043226_0.680|GO:0043229_0.639|GO:0005737_0.628|GO:0016020_0.620|GO:0009987_0.570|GO:0043227_0.555|GO:0043231_0.531
|
IPR001164+26-142_26-143_27-130_38-57_57-74+|IPR037278+26-132+|IPR038508+14-158+
|
SM00105+26-142+
|
PF01412+27-130+Putative_GTPase_activating_protein_for_Arf
|
G3DSA:1.10.220.150:FF:000004+18-158+Putative_ADP-ribosylation_factor_GTPase-activating_protein_2
|
PTHR45686+22-501+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
145-508
|
1.000
|
1-144
|
2crw_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.828
|
56551.460
|
8.363
|
8.500
|
29.331
|
8.661
|
56.890
|
43.110
|
15.945
|
13.386
|
49.803
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
darkturquoise
|
3989.527
|
3278.481
|
2827.480
|
3255.740
|
4188.231
|
4375.077
|
2777.000
|
3171.071
|
7988.838
|
2510.148
|
4858.158
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.443
|
-0.147
|
0.312
|
0.331
|
— |
-0.646
|
-0.568
|
— | — | — | — | — | — |
No JSON data available for plots.