Hg_chrom3_TN10mRNA_5544
Organism: Heterodera glycines Gene Locus: chr3:6628343-6631746 Feature type: polypeptideProtein Sequence
Length: 625
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.949 | 0.856 | 0.524 | 0.662 | 0.613 | 0.985 | 1.048 | 1.52 | 1.173 | 1.557 | 0.679 | 0.847 | 1.911 | 0.923 | 1.143 | 0.914 | 0.761 | 1.164 | 1.108 | 1.129 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5264
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.645
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
RRRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.128
|
0.123
|
0.021
|
0.124
|
0.331
|
0.313
|
0.264
|
0.040
|
0.535
|
0.134
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007707
|
1.000
|
1.000
|
Hsc_gene_5720.t1
|
— | — |
Q8CBH5.1 Major facilitator superfamily domain-containing protein 6 [Mus musculus]
|
KAF7632725.1 MFS_1_like domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.867|GO:0110165_0.867|GO:0016020_0.846|GO:0008150_0.663|GO:0071944_0.571|GO:0005886_0.562|GO:0003674_0.541
|
IPR024989+26-106_346-530+|IPR036259+18-115_19-109_352-547_355-554+|IPR051717+18-123+
|
— |
PF12832+26-106_346-530+MFS_1_like_family
|
— |
PTHR16172+18-123+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
608-625
|
1.000
|
1-607
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.862
|
69490.700
|
9.744
|
31.500
|
19.680
|
15.200
|
38.240
|
61.760
|
13.120
|
6.560
|
48.960
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1670.502
|
3242.399
|
2848.355
|
1173.345
|
328.389
|
189.887
|
154.012
|
1560.616
|
327.238
|
3501.642
|
2141.184
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.416
|
-1.604
|
-1.171
|
-1.868
|
-0.776
|
-0.293
|
2.939
|
-3.202
|
-3.515
|
— |
-3.057
|
— | — |
No JSON data available for plots.