SCN Proteipedia

Hg_chrom3_TN10mRNA_5553

Organism: Heterodera glycines Gene Locus: chr3:6664025-6668577 Feature type: polypeptide

Protein Sequence

Length: 305

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.648	1.144	0.715	0.904	1.475	2.354	0.429	1.311	1.311	0.886	0.695	1.543	1.093	1.009	2.074	0.703	0.699	0.944	0.252	1.157	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5272	—	—	1.444	2.000	2.000	1.000	2.000	1.000	1.000	1.000	2.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	3-Not_Clustered	0.953

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRAR,RRLEEEKAQRQERIRQK	81-102	0.985	22-51	0.975	—	—	0.000	—	—	0.890	0.194	0.003	0.393	0.027	0.029	0.032	0.006	0.029	0.038

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	—	—	—	—	—	—	Q22703.2 Transcription factor dpl-1 [Caenorhabditis elegans]	KAI3415704.1 Transcription factor Dp-2 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	Yes	GO:0005667\|GO:0006355\|GO:0051726	GO:0005575_0.904\|GO:0008150_0.898\|GO:0110165_0.894\|GO:0005622_0.860\|GO:0009987_0.850\|GO:0003674_0.818\|GO:0005488_0.809\|GO:0065007_0.774\|GO:0050789_0.772\|GO:0008152_0.758\|GO:0043170_0.758\|GO:0016020_0.755\|GO:0050794_0.752\|GO:0043226_0.750\|GO:0044238_0.745\|GO:0043229_0.735\|GO:0044237_0.735\|GO:0009058_0.733\|GO:0009059_0.733\|GO:0044249_0.733\|GO:0006139_0.718\|GO:0034654_0.706\|GO:0090304_0.706\|GO:0141187_0.701\|GO:0043227_0.685\|GO:0019222_0.674\|GO:0043231_0.664\|GO:0031323_0.660\|GO:0010467_0.655\|GO:0060255_0.653\|GO:0032991_0.650\|GO:0005634_0.648\|GO:0009889_0.637\|GO:0010468_0.637\|GO:0010556_0.637\|GO:0031326_0.637\|GO:0005515_0.605\|GO:0080090_0.578\|GO:0016070_0.558\|GO:0032774_0.558\|GO:0048518_0.547\|GO:0019219_0.539\|GO:0048522_0.538\|GO:0051252_0.535\|GO:0006351_0.532\|GO:2001141_0.527\|GO:0006355_0.524\|GO:0005667_0.506\|GO:0005737_0.506	IPR003316+92-176_94-176+\|IPR014889+183-300_184-233+\|IPR015648+69-229+\|IPR036388+86-181+\|IPR036390+95-177+\|IPR037241+183-255+\|IPR038168+182-243+	SM01138+183-300+\|SM01372+92-176+	PF02319+94-176+E2F/DP_family_winged-helix_DNA-binding_domain\|PF08781+184-233+Transcription_factor_DP	G3DSA:1.10.10.10:FF:000047+87-181+Transcription_factor	PTHR12548+69-229+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-305	1cf7_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.704	35896.780	8.637	10.000	30.164	10.820	53.443	46.557	17.377	12.787	41.311

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	grey	155.765	41.859	144.792	70.347	29.646	24.306	61.284	113.607	56.021	457.264	285.303

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.561	0.612	-0.933	-1.278	—	1.341	2.118	-0.750	—	—	—	—	—

No JSON data available for plots.

Back to Browser