SCN Proteipedia

Hg_chrom3_TN10mRNA_5558

Organism: Heterodera glycines Gene Locus: chr3:6678245-6683594 Feature type: polypeptide

Protein Sequence

Length: 635

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.952	1.062	0.687	0.977	1.339	1.009	0.675	1.417	0.945	1.532	0.74	2.131	1.181	0.636	1.543	0.81	0.852	0.883	0.848	0.926	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5277	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	4-Egg_Male	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane\|golgi_apparatus	—	RRSLSMRLIARKKCA	—	—	—	—	—	—	0.000	—	—	0.126	0.057	0.026	0.338	0.410	0.476	0.663	0.143	0.571	0.289

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003597	2.000	1.000	Hsc_gene_5773.t1	Hsc_gene_5712.t1	—	O45539.2 Tyrosine protein-kinase src-2 [Caenorhabditis elegans]	KAI3415773.1 Tyrosine protein-kinase src-2 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0004713\|GO:0005524\|GO:0006468	GO:0008150_0.893\|GO:0005575_0.768\|GO:0110165_0.764\|GO:0003674_0.758\|GO:0009987_0.729\|GO:0003824_0.674\|GO:0065007_0.658\|GO:0005622_0.654\|GO:0016740_0.640\|GO:0140096_0.636\|GO:0050789_0.618\|GO:0016020_0.612\|GO:0032501_0.587\|GO:0016772_0.580\|GO:0050794_0.565\|GO:0005737_0.560\|GO:0016301_0.558\|GO:0016773_0.558\|GO:0050896_0.553\|GO:0004672_0.548\|GO:0071944_0.533\|GO:0005886_0.527\|GO:0032502_0.525	IPR000719+218-472+\|IPR000980+91-194_95-185_106-179+\|IPR001245+219-346_257-270_327-345_414-467_438-460+\|IPR008266+333-345+\|IPR011009+25-95_209-478+\|IPR017441+224-247+\|IPR020635+218-467+\|IPR036860+101-206_107-238+\|IPR050198+415-469+	SM00219+218-467+\|SM00252+95-185+	PF00017+106-179+SH2_domain\|PF07714+219-346_414-467+Protein_tyrosine_and_serine/threonine_kinase	G3DSA:3.30.200.20:FF:000053+209-295+Tyrosine-protein_kinase\|G3DSA:3.30.505.10:FF:000044+95-202+Tyrosine-protein_kinase	PTHR24418+415-469+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	618-635	1.000	1-617	9bt8_C	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.634	72362.340	7.922	13.000	27.087	11.339	46.457	53.543	15.276	11.811	45.039

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	521.624	614.865	409.986	394.924	395.447	373.191	455.476	746.697	342.989	753.392	577.505

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.815	-0.776	—	—	—	0.297	0.899	-0.573	—	—	—	—	—

No JSON data available for plots.

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