SCN Proteipedia

Hg_chrom3_TN10mRNA_5559

Organism: Heterodera glycines Gene Locus: chr3:6686500-6695649 Feature type: polypeptide

Protein Sequence

Length: 1,193

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.867	1.365	0.869	0.491	1.174	1.29	0.858	1.299	1.192	0.951	1.105	1.331	0.908	1.048	1.351	1.138	0.646	0.864	0.838	0.764	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5278	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	cytoplasm	—	RRKAPQQFARKGRKP,EQRRKAPQQFARKGRK,KKRKEQQKQSGNEQRRKAP,RRRSNSSNLLRRAEEKRQR,RRSNSSNLLRRAEEKRQRT	—	—	—	—	—	—	0.000	—	—	0.301	0.156	0.022	0.687	0.130	0.289	0.182	0.023	0.368	0.035

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003596	2.000	1.000	Hsc_gene_5721.t1	Hsc_gene_5710.t1;Hsc_gene_5721.t1	—	Q23356.3 Serine/threonine-protein kinase mig-15 [Caenorhabditis elegans]	XP_024503438.1 Mitogen-activated protein kinase kinase kinase kinase 4 [Strongyloides ratti];CEF64237.1 Mitogen-activated protein kinase kinase kinase kinase 4 [Strongyloides ratti]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0005524\|GO:0006468	GO:0008150_0.966\|GO:0009987_0.936\|GO:0005575_0.898\|GO:0065007_0.898\|GO:0110165_0.894\|GO:0050789_0.890\|GO:0050794_0.867\|GO:0003674_0.763\|GO:0005622_0.698\|GO:0007154_0.670\|GO:0050896_0.665\|GO:0023052_0.664\|GO:0003824_0.641\|GO:0140096_0.641\|GO:0051716_0.639\|GO:0016740_0.630\|GO:0016772_0.599\|GO:0007165_0.587\|GO:0016043_0.576\|GO:0071840_0.576\|GO:0016301_0.575\|GO:0016773_0.571\|GO:0004672_0.557\|GO:0016020_0.549\|GO:0048518_0.542\|GO:0032501_0.538\|GO:0048522_0.520\|GO:0010646_0.515\|GO:0023051_0.512\|GO:0008152_0.510\|GO:0043170_0.510	IPR000719+18-287_20-287+\|IPR001180+873-1175_878-1169_887-1164+\|IPR008271+144-156+\|IPR011009+18-288+\|IPR017441+24-47+\|IPR051700+4-1189+	SM00036+873-1175+\|SM00220+18-287+	PF00069+20-287+Protein_kinase_domain\|PF00780+887-1164+CNH_domain	G3DSA:1.10.510.10:FF:000003+103-313+TRAF2_and_NCK-interacting_protein_kinase_isoform_4\|G3DSA:3.30.200.20:FF:000259+1-102+Mitogen-activated_protein_kinase_kinase_kinase_kinase_4	PTHR47096+4-1189+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	311-819	2.000	1-310;820-1193	2x7f_E	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.901	133412.920	9.419	40.500	28.332	9.556	51.132	48.868	16.513	11.819	49.790

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	3307.854	6520.008	3130.634	3497.038	3416.625	3966.289	2501.569	3451.001	3186.667	2150.675	2594.672

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.287	-1.036	0.268	—	0.231	-0.656	-0.306	-0.322	—	—	—	—	—

No JSON data available for plots.

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