SCN Proteipedia

Hg_chrom3_TN10mRNA_5563

Organism: Heterodera glycines Gene Locus: chr3:6706922-6708431 Feature type: polypeptide

Protein Sequence

Length: 371

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.348	1.191	0.441	0.372	0.629	2.488	0.802	1.348	0.539	1.166	0.408	0.793	1.123	1.037	0.77	2.002	1.458	0.613	0.0	0.476	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5282	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	16-Females_and_Males	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.695	0.105	0.004	0.460	0.050	0.074	0.165	0.052	0.077	0.037

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007710	1.000	1.000	Hsc_gene_5725.t1	Hsc_gene_5725.t1	—	Q9BZK7.1 F-box-like/WD repeat-containing protein TBL1XR1 [Homo sapiens]	KAF7638710.1 LisH domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003714\|GO:0005515	GO:0005575_0.944\|GO:0110165_0.941\|GO:0016020_0.870\|GO:0008150_0.869\|GO:0005622_0.867\|GO:0043226_0.823\|GO:0043229_0.804\|GO:0043227_0.778\|GO:0043231_0.770\|GO:0065007_0.765\|GO:0050789_0.762\|GO:0009987_0.756\|GO:0050794_0.754\|GO:0050896_0.703\|GO:0005634_0.698\|GO:0008152_0.671\|GO:0019222_0.671\|GO:0031323_0.668\|GO:0044237_0.668\|GO:0003674_0.664\|GO:0005488_0.664\|GO:0043170_0.659\|GO:0060255_0.659\|GO:0009058_0.642\|GO:0009889_0.642\|GO:0031326_0.642\|GO:0044249_0.642\|GO:0009059_0.640\|GO:0010467_0.640\|GO:0010468_0.640\|GO:0010556_0.640\|GO:0048519_0.629\|GO:0048518_0.627\|GO:0048522_0.619\|GO:0048523_0.614\|GO:0044238_0.609\|GO:0080090_0.609\|GO:0006139_0.588\|GO:0016070_0.588\|GO:0019219_0.588\|GO:0051252_0.588\|GO:0090304_0.588\|GO:0006351_0.574\|GO:0032774_0.574\|GO:0034654_0.574\|GO:0141187_0.574\|GO:0005515_0.571\|GO:2001141_0.569\|GO:0006355_0.568\|GO:0009893_0.540\|GO:0010604_0.535\|GO:0009892_0.521\|GO:0031324_0.513\|GO:0010605_0.512\|GO:0009890_0.504\|GO:0010558_0.504\|GO:0031327_0.504	IPR006594+4-36_6-32+\|IPR045183+1-179+	SM00667+4-36+	PF08513+6-32+LisH	G3DSA:1.20.960.30:FF:000001+1-92+F-box-like/WD_repeat-containing_protein_TBL1XR1	PTHR22846+1-179+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	100-371	1.000	1-99	2xte_L	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.922	39153.190	7.837	6.000	15.364	8.356	53.100	46.900	9.164	6.199	59.299

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkred	yellow	884.151	817.811	847.189	696.277	738.149	918.588	1395.792	1237.244	899.317	699.529	785.153

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.178	-0.369	-0.175	—	0.330	0.614	—	—	—	—	—	—	—

No JSON data available for plots.

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