SCN Proteipedia

Hg_chrom3_TN10mRNA_5564

Organism: Heterodera glycines Gene Locus: chr3:6712346-6720062 Feature type: polypeptide

Protein Sequence

Length: 1,647 (Signal peptide: 1-34)

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.946	1.059	1.247	2.094	1.407	1.619	0.802	1.154	0.796	0.894	0.708	0.643	1.265	0.736	1.128	1.084	0.896	0.736	0.654	0.571	0.0

Composition

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5283	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	11-Not_Clustered	0.495

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	secreted	signal_peptide	cytoplasm\|extracellular\|cell_membrane	nucleus	RRREILSLAEQIRKESR	—	—	—	—	1-34	0.880	0.949	0.000	0.000	0.133	0.363	0.009	0.539	0.135	0.137	0.194	0.037	0.649	0.679

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007711	1.000	1.000	Hsc_gene_5726.t1	Hsc_gene_17825.t1;Hsc_gene_17825.t2;Hsc_gene_5726.t1	—	Q18823.3 Laminin-like protein lam-2 [Caenorhabditis elegans]	AVA09649.1 putative effector protein [Heterodera avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0005575_0.824\|GO:0110165_0.821\|GO:0008150_0.814\|GO:0009987_0.677\|GO:0071944_0.677\|GO:0032502_0.626\|GO:0048856_0.626\|GO:0065007_0.538\|GO:0032501_0.533\|GO:0050789_0.528\|GO:0071840_0.518\|GO:0016043_0.512	IPR000034+529-717_577-702_581-716+\|IPR000742+797-832_864-904_924-960_963-994+\|IPR002049+303-351_304-351_304-360_304-362_362-417_363-416_418-464_419-463_419-465_437-468_466-516_466-518_698-749_717-738_751-799_752-798_752-800_768-803_801-843_801-848_851-898_851-903_851-904_905-960_906-959_906-961_932-964_962-1008_962-1015_982-1013_1011-1055_1011-1056_1011-1058_1030-1061+\|IPR008211+59-302_61-303_65-302+\|IPR050440+52-1602+	SM00136+59-302+\|SM00180+304-360_363-416_419-463_466-516_698-749_752-798_801-848_851-903_906-959_962-1008_1011-1055+\|SM00181+797-832_864-904_924-960_963-994+\|SM00281+577-702+	PF00052+581-716+Laminin_B_(Domain_IV)\|PF00053+304-351_363-416_419-463_466-516_717-738_752-798_801-843_851-898_906-959_962-1008_1011-1056+Laminin_EGF_domain\|PF00055+65-302+Laminin_N-terminal_(Domain_VI)	G3DSA:2.10.25.10:FF:000051+851-905+Laminin_subunit_alpha_4\|G3DSA:2.10.25.10:FF:000067+423-464+Laminin_subunit_gamma_1\|G3DSA:2.10.25.10:FF:000074+962-1009+Laminin_subunit_alpha\|G3DSA:2.10.25.10:FF:000090+465-517+laminin_subunit_alpha\|G3DSA:2.10.25.10:FF:000105+906-960+laminin_subunit_gamma-1\|G3DSA:2.10.25.10:FF:000166+329-422+laminin_subunit_gamma-1\|G3DSA:2.10.25.10:FF:000758+727-805+Laminin_subunit_gamma_1\|G3DSA:2.60.120.260:FF:000018+48-328+Laminin_subunit_gamma_1	PTHR10574+52-1602+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1161-1247;1319-1647	2.000	1-1160;1248-1318	4aqt_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.645	182590.790	4.663	-65.000	27.808	9.654	51.730	48.270	12.508	15.301	54.098

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	white	3738.291	3676.726	2131.704	4374.963	7542.330	9171.389	7639.824	2968.862	790.410	1697.542	1308.771

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.016	0.114	1.147	0.754	0.297	-0.254	-1.738	1.508	—	2.600	2.614	—	—

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