Hg_chrom3_TN10mRNA_5566
Organism: Heterodera glycines Gene Locus: chr3:6729096-6730959 Feature type: polypeptideProtein Sequence
Length: 267
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.61 | 0.871 | 0.409 | 0.129 | 0.437 | 0.288 | 0.892 | 1.498 | 0.749 | 0.86 | 0.624 | 1.102 | 1.144 | 1.224 | 1.987 | 2.247 | 1.658 | 0.681 | 0.576 | 2.093 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5285
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
60-80
|
0.999
|
3-53
|
0.997
|
— | — |
0.000
|
— | — |
0.232
|
0.264
|
0.015
|
0.565
|
0.095
|
0.063
|
0.105
|
0.097
|
0.161
|
0.086
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007713
|
1.000
|
1.000
|
Hsc_gene_5728.t1
|
Hsc_gene_5728.t1
|
— | — |
KAI1707913.1 sodium bile acid symporter family domain-containing protein [Ditylenchus destructor]
|
No
|
0.410
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1
|
1.000
|
2-267
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.844
|
29862.500
|
10.812
|
28.000
|
21.723
|
14.981
|
52.434
|
47.566
|
16.854
|
4.869
|
55.805
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
732.630
|
724.647
|
1262.594
|
842.341
|
371.514
|
908.943
|
423.167
|
2710.169
|
116.326
|
401.745
|
279.423
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.573
|
— |
-0.476
|
-1.213
|
1.305
|
-1.092
|
1.472
|
-2.536
|
— |
2.993
|
— | — | — |
No JSON data available for plots.