Hg_chrom3_TN10mRNA_5567
Organism: Heterodera glycines Gene Locus: chr3:6731117-6737521 Feature type: polypeptideProtein Sequence
Length: 811
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.817 | 0.918 | 0.673 | 0.638 | 1.192 | 1.549 | 0.822 | 1.973 | 1.178 | 1.133 | 0.803 | 0.87 | 0.993 | 0.688 | 1.636 | 1.022 | 1.092 | 0.99 | 0.948 | 0.653 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5286
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.536
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKIHPNHIISKAHKNLRK,KKAKTPTESIFVFLRRRTT,RRRTTTILLLIIAPSIRKR,RRTTTILLLIIAPSIRKRT,GERKLGKRGEKSAARGAPRESNRQTDRHSAKIRRHR
|
58-79
|
0.999
|
— | — | — | — |
0.001
|
— | — |
0.901
|
0.077
|
0.025
|
0.235
|
0.106
|
0.041
|
0.037
|
0.085
|
0.097
|
0.075
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003598
|
1.000
|
2.000
|
Hsc_gene_5729.t1;Hsc_gene_5729.t2
|
Hsc_gene_5729.t1;Hsc_gene_5729.t2
|
— |
Q5SP67.1 WD repeat-containing protein 26 [Danio rerio]
|
KAI1717313.1 WD repeat-containing protein 26 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.923|GO:0110165_0.801|GO:0005622_0.699|GO:0016020_0.605|GO:0043226_0.579|GO:0043229_0.554|GO:0008150_0.516|GO:0043227_0.509
|
IPR001680+502-541_505-540_509-550_553-592_595-636_679-718_721-763_736-763_745-772_766-806_769-806_773-811+|IPR006594+299-331+|IPR015943+493-586_594-810+|IPR019775+750-764+|IPR020472+528-542_750-764_793-807+|IPR036322+492-806+|IPR051350+137-808+
|
SM00320+502-541_553-592_595-636_679-718_721-763_766-806+
|
PF00400+505-540_736-763_769-806+WD_domain,_G-beta_repeat
|
— |
PTHR22838+137-808+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
82-283
|
2.000
|
1-81;284-811
|
5yzv_E
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.813
|
91517.820
|
9.477
|
36.000
|
28.113
|
10.974
|
51.911
|
48.089
|
17.263
|
10.851
|
47.349
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightgreen
|
3818.612
|
6084.537
|
5868.782
|
4099.294
|
3126.673
|
3778.273
|
3957.474
|
6876.671
|
1453.818
|
2944.175
|
2305.451
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.281
|
-0.707
|
-0.409
|
-0.423
|
0.288
|
— |
0.755
|
-0.653
|
— | — | — | — | — |
No JSON data available for plots.