Hg_chrom3_TN10mRNA_5570
Organism: Heterodera glycines Gene Locus: chr3:6776346-6780227 Feature type: polypeptideProtein Sequence
Length: 658
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.99 | 0.848 | 0.774 | 0.629 | 1.089 | 1.052 | 0.615 | 1.216 | 0.777 | 1.273 | 0.322 | 0.894 | 1.604 | 1.315 | 1.985 | 1.585 | 0.997 | 0.783 | 0.935 | 0.313 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5289
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RKRR
|
35-59
|
0.996
|
23-43
|
1.000
|
— | — |
0.000
|
— | — |
0.864
|
0.163
|
0.009
|
0.599
|
0.076
|
0.087
|
0.060
|
0.071
|
0.051
|
0.039
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007714
|
1.000
|
1.000
|
Hsc_gene_5731.t1
|
Hsc_gene_5731.t1
|
— |
Q9WTQ6.1 Tribbles homolog 3 [Rattus norvegicus]
|
KAI3415722.1 Tribbles 2 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0008150_0.875|GO:0009987_0.737|GO:0065007_0.705|GO:0050789_0.669|GO:0005575_0.650|GO:0110165_0.639|GO:0050794_0.635|GO:0050896_0.611|GO:0003674_0.565|GO:0005622_0.548|GO:0016020_0.523|GO:0008152_0.512
|
IPR000719+168-460_182-459_290-459+|IPR011009+257-462+|IPR024104+297-482+
|
SM00220+182-459+
|
PF00069+290-459+Protein_kinase_domain
|
— |
PTHR22961+297-482+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-37;535-658
|
1.000
|
38-534
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.869
|
73429.820
|
8.501
|
15.000
|
25.076
|
10.486
|
50.000
|
50.000
|
14.286
|
10.790
|
52.584
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
3633.682
|
18429.897
|
3860.962
|
2123.036
|
1922.200
|
2743.470
|
2737.633
|
4801.517
|
2281.003
|
454.587
|
1237.337
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.485
|
-3.255
|
-0.754
|
-0.176
|
0.528
|
— |
0.711
|
-0.672
|
2.199
|
— | — | — | — |
No JSON data available for plots.