Hg_chrom3_TN10mRNA_5573
Organism: Heterodera glycines Gene Locus: chr3:6789936-6792002 Feature type: polypeptideProtein Sequence
Length: 345
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.045 | 0.741 | 0.474 | 0.6 | 0.773 | 0.966 | 0.966 | 2.174 | 1.546 | 1.214 | 0.747 | 1.194 | 1.047 | 0.725 | 1.301 | 1.035 | 0.998 | 0.966 | 1.338 | 1.279 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5291
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain|mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.117
|
0.901
|
0.067
|
0.113
|
0.185
|
0.245
|
0.184
|
0.124
|
0.147
|
0.061
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007715
|
1.000
|
1.000
|
Hsc_gene_5733.t1
|
Hsc_gene_5733.t1
|
— |
Q628Z2.1 Probable calcium-binding mitochondrial carrier CBG00135 [Caenorhabditis briggsae]
|
KHN86344.1 putative calcium-binding mitochondrial carrier [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005743|GO:0055085
|
GO:0005575_0.834|GO:0110165_0.830|GO:0008150_0.814|GO:0016020_0.767|GO:0005622_0.739|GO:0005737_0.720|GO:0009987_0.706|GO:0043226_0.688|GO:0043229_0.686|GO:0043227_0.671|GO:0043231_0.667|GO:0003674_0.544|GO:0051179_0.529|GO:0006810_0.526|GO:0051234_0.526|GO:0005739_0.519
|
IPR002067+61-74_74-88_117-137_167-185_211-229_259-281+|IPR002167+53-73_78-98_302-322+|IPR018108+56-142_57-145_152-238_152-242_250-339_256-341+|IPR023395+53-343_55-335+
|
— |
PF00153+57-145_152-242_256-341+Mitochondrial_carrier_protein
|
G3DSA:1.50.40.10:FF:000003+53-341+Putative_calcium-binding_mitochondrial_carrier_protein_scamc-2
|
PTHR24089+35-341+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-27
|
1.000
|
28-345
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.806
|
38496.360
|
9.858
|
21.500
|
22.899
|
14.203
|
43.188
|
56.812
|
15.652
|
7.246
|
48.116
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
midnightblue
|
1153.836
|
1400.834
|
1282.685
|
1413.944
|
1385.060
|
1217.366
|
1057.550
|
1358.118
|
971.525
|
901.057
|
931.258
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.356
|
-0.123
|
0.248
|
— |
-0.172
|
-0.193
|
— |
-0.219
|
— | — | — | — | — |
No JSON data available for plots.