Hg_chrom3_TN10mRNA_5574
Organism: Heterodera glycines Gene Locus: chr3:6792070-6795011 Feature type: polypeptideProtein Sequence
Length: 495
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.705 | 1.503 | 0.661 | 0.627 | 1.38 | 1.036 | 0.265 | 1.111 | 1.706 | 1.665 | 1.286 | 1.426 | 1.515 | 0.155 | 1.196 | 1.385 | 0.729 | 0.643 | 0.466 | 0.951 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5292
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.610
|
0.145
|
0.012
|
0.418
|
0.183
|
0.135
|
0.210
|
0.246
|
0.196
|
0.066
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003600
|
1.000
|
2.000
|
Hsc_gene_5734.t1;Hsc_gene_5734.t2
|
Hsc_gene_5734.t1;Hsc_gene_5734.t2
|
— |
Q23679.1 Mediator of RNA polymerase II transcription subunit 22 [Caenorhabditis elegans]
|
KAI1706381.1 surfeit locus protein 5 subunit 22 of mediator complex domain-containing protein [Ditylenchus destructor]
|
No
|
0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003712|GO:0006357|GO:0016592
|
GO:0005575_0.929|GO:0110165_0.927|GO:0005622_0.900|GO:0016020_0.881|GO:0043226_0.860|GO:0043229_0.843|GO:0043227_0.817|GO:0043231_0.803|GO:0005634_0.642|GO:0031974_0.580|GO:0043233_0.580|GO:0031981_0.576|GO:0070013_0.576
|
IPR009332+34-142+
|
— |
PF06179+34-142+Surfeit_locus_protein_5_subunit_22_of_Mediator_complex
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-23
|
1.000
|
24-495
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.746
|
57501.400
|
9.276
|
17.500
|
28.485
|
11.515
|
53.131
|
46.869
|
16.566
|
11.919
|
39.394
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
greenyellow
|
1413.693
|
2125.683
|
1548.971
|
1626.549
|
1493.222
|
1307.079
|
685.139
|
1028.849
|
1169.660
|
1626.851
|
1430.912
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.686
|
-0.523
|
0.179
|
-0.155
|
-0.177
|
-0.928
|
-0.449
|
-0.451
|
— | — | — | — | — |
No JSON data available for plots.