Hg_chrom3_TN10mRNA_5576
Organism: Heterodera glycines Gene Locus: chr3:6799460-6801967 Feature type: polypeptideProtein Sequence
Length: 469
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.793 | 0.843 | 0.737 | 1.029 | 0.959 | 0.875 | 0.812 | 1.279 | 1.658 | 1.844 | 0.743 | 1.505 | 1.185 | 1.148 | 1.567 | 0.761 | 0.419 | 0.614 | 1.312 | 1.129 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5294
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.495
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — |
87-111
|
0.997
|
— | — | — | — |
0.000
|
— | — |
0.242
|
0.128
|
0.025
|
0.302
|
0.866
|
0.372
|
0.394
|
0.071
|
0.238
|
0.063
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007717
|
1.000
|
1.000
|
Hsc_gene_5736.t1
|
Hsc_gene_5736.t1
|
— |
Q0P5B7.1 Arylacetamide deacetylase [Bos taurus]
|
KAI1706373.1 alpha/beta hydrolase fold domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016787
|
GO:0005575_0.819|GO:0110165_0.819|GO:0016020_0.707|GO:0003674_0.698|GO:0008150_0.681|GO:0071944_0.591|GO:0005886_0.587|GO:0009987_0.579|GO:0005622_0.578|GO:0003824_0.554|GO:0005737_0.523|GO:0016787_0.518|GO:0043226_0.513
|
IPR013094+146-293_383-443+|IPR029058+111-334_111-466_345-464+|IPR050300+135-444+
|
— |
PF07859+146-293_383-443+alpha/beta_hydrolase_fold
|
— |
PTHR48081+135-444+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
321-375
|
2.000
|
1-320;376-469
|
4ypv_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.831
|
53581.750
|
8.973
|
19.000
|
24.947
|
12.367
|
39.872
|
60.128
|
15.139
|
9.808
|
42.217
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
magenta
|
660.920
|
754.203
|
1749.659
|
659.733
|
708.171
|
1561.822
|
751.191
|
895.480
|
165.356
|
112.411
|
135.101
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.984
|
-0.330
|
-1.297
|
— |
1.156
|
-1.048
|
-0.914
|
— | — | — |
3.570
|
— | — |
No JSON data available for plots.