Hg_chrom3_TN10mRNA_5578
Organism: Heterodera glycines Gene Locus: chr3:6803359-6805502 Feature type: polypeptideProtein Sequence
Length: 350
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.532 | 0.997 | 0.519 | 0.887 | 0.857 | 0.806 | 0.476 | 1.286 | 0.825 | 2.046 | 0.476 | 1.008 | 2.857 | 0.879 | 1.866 | 1.347 | 0.749 | 0.866 | 0.659 | 0.756 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5296
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
peroxisome
|
— | — |
104-124
|
1.000
|
21-61
|
0.991
|
— | — |
0.000
|
— | — |
0.383
|
0.493
|
0.066
|
0.129
|
0.474
|
0.033
|
0.264
|
0.661
|
0.015
|
0.055
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007718
|
1.000
|
1.000
|
Hsc_gene_5737.t1
|
Hsc_gene_5737.t1
|
— |
Q19189.1 Peroxisome assembly protein 12 [Caenorhabditis elegans]
|
KAH7720701.1 PRX-12 protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0005778|GO:0008270|GO:0016558
|
GO:0008150_0.952|GO:0009987_0.897|GO:0005575_0.796|GO:0110165_0.796|GO:0071840_0.738|GO:0016043_0.732|GO:0006996_0.696|GO:0005622_0.674|GO:0016020_0.671|GO:0007031_0.670|GO:0043226_0.577|GO:0005737_0.571|GO:0043229_0.568|GO:0043227_0.555|GO:0043231_0.544
|
IPR006845+36-257+|IPR017375+19-350_26-349+
|
— |
PF04757+36-257+Pex2_/_Pex12_amino_terminal_region
|
— |
PTHR12888+26-349+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-350
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.794
|
40729.440
|
9.965
|
19.500
|
22.857
|
16.286
|
44.286
|
55.714
|
14.857
|
8.000
|
42.571
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
orange
|
532.236
|
397.009
|
718.517
|
532.158
|
501.315
|
462.428
|
645.007
|
507.556
|
588.530
|
475.638
|
524.020
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.625
|
0.286
|
-0.324
|
— | — |
0.488
|
— |
0.486
|
— | — | — | — | — |
No JSON data available for plots.