Hg_chrom3_TN10mRNA_5579
Organism: Heterodera glycines Gene Locus: chr3:6805752-6808529 Feature type: polypeptideProtein Sequence
Length: 591
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.689 | 1.377 | 1.077 | 0.467 | 1.156 | 1.215 | 0.624 | 0.931 | 1.053 | 1.555 | 0.923 | 0.896 | 1.598 | 0.879 | 1.658 | 1.039 | 0.666 | 0.923 | 0.911 | 0.348 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5297
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.714
|
0.162
|
0.010
|
0.510
|
0.083
|
0.085
|
0.066
|
0.003
|
0.026
|
0.040
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007719
|
1.000
|
1.000
|
Hsc_gene_5738.t1
|
Hsc_gene_5738.t1
|
— |
Q8R3F9.1 Speckle targeted PIP5K1A-regulated poly(A) polymerase [Mus musculus]
|
KAI3415728.1 Speckle targeted PIP5K1A-regulated poly(A) polymerase [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723
|
GO:0008150_0.944|GO:0009987_0.902|GO:0003674_0.849|GO:0065007_0.845|GO:0050789_0.829|GO:0005575_0.810|GO:0050794_0.800|GO:0110165_0.795|GO:0008152_0.786|GO:0043170_0.775|GO:0044238_0.775|GO:0009058_0.764|GO:0044237_0.763|GO:0044249_0.754|GO:0005622_0.746|GO:0009059_0.745|GO:0048518_0.745|GO:0006139_0.735|GO:0010467_0.734|GO:0048519_0.734|GO:0019222_0.732|GO:0031323_0.724|GO:0060255_0.722|GO:0048523_0.719|GO:0090304_0.719|GO:0080090_0.717|GO:0034654_0.715|GO:0003824_0.713|GO:0009889_0.711|GO:0016070_0.710|GO:0010468_0.707|GO:0010556_0.707|GO:0031326_0.707|GO:0141187_0.707|GO:0032774_0.706|GO:0065008_0.704|GO:0009893_0.703|GO:0010604_0.701|GO:0019219_0.693|GO:0009056_0.692|GO:0009892_0.691|GO:0010605_0.689|GO:0051252_0.688|GO:0009057_0.687|GO:0031324_0.687|GO:0006396_0.684|GO:0009890_0.683|GO:0010558_0.683|GO:0016740_0.683|GO:0031327_0.683|GO:0009894_0.682|GO:0045935_0.682|GO:0051254_0.681|GO:0010629_0.680|GO:0016071_0.680|GO:0010608_0.676|GO:0034655_0.676|GO:0141188_0.676|GO:0006401_0.675|GO:0009896_0.675|GO:0006402_0.674|GO:0005488_0.671|GO:0031123_0.670|GO:0043487_0.670|GO:0043488_0.670|GO:0050779_0.670|GO:0061013_0.670|GO:0061014_0.670|GO:0061157_0.670|GO:1903311_0.670|GO:1903313_0.670|GO:0016772_0.662|GO:0016779_0.656|GO:0005737_0.651|GO:0070569_0.650|GO:0016020_0.617|GO:0043226_0.591|GO:0043229_0.584|GO:0097159_0.577|GO:0003676_0.556|GO:0003723_0.550|GO:0010586_0.540|GO:0140640_0.536|GO:0071076_0.535|GO:0140098_0.532|GO:0043227_0.530|GO:0050265_0.524|GO:0043231_0.519
|
IPR000504+43-117_44-113_45-109+|IPR012677+32-162+|IPR013087+3-27_5-27+|IPR035979+39-120+|IPR036236+3-33+|IPR043519+152-336_166-335+
|
SM00360+44-113+
|
PF00076+45-109+RNA_recognition_motif|PF12874+3-27+Zinc-finger_of_C2H2_type|PF22600+154-334+Poly(A)_RNA_polymerase,_mitochondrial-like,_central_palm_domain
|
— |
PTHR12271+123-560+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
548-591
|
1.000
|
1-547
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.795
|
67478.020
|
8.982
|
13.500
|
28.934
|
9.983
|
50.931
|
49.069
|
16.074
|
12.860
|
46.362
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
midnightblue
|
1491.243
|
1727.288
|
1462.327
|
1389.836
|
1588.265
|
1421.365
|
2352.333
|
1409.862
|
769.995
|
1689.961
|
1295.690
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.470
|
-0.451
|
— |
0.161
|
— |
0.738
|
— |
0.882
|
— | — | — | — | — |
No JSON data available for plots.