SCN Proteipedia

Hg_chrom3_TN10mRNA_5582

Organism: Heterodera glycines Gene Locus: chr3:6818045-6818892 Feature type: polypeptide

Protein Sequence

Length: 146

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.195	1.115	0.747	1.653	0.913	1.405	0.408	1.712	1.065	1.111	0.83	1.209	1.903	0.922	1.817	1.272	0.337	0.208	0.527	1.209	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5300	—	—	1.111	1.000	1.000	1.000	1.000	1.000	2.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	24-Not_Clustered	0.881

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	—	33-55	0.915	—	—	—	—	0.000	—	—	0.347	0.171	0.006	0.671	0.034	0.101	0.057	0.029	0.050	0.113

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007722	1.000	1.000	Hsc_gene_5741.t1	Hsc_gene_5741.t1	—	—	KAF7635052.1 hypothetical protein Mgra_00005493, partial [Meloidogyne graminicola]	No	0.170

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003729\|GO:0046872	GO:0008150_0.881\|GO:0065007_0.798\|GO:0050789_0.793\|GO:0003674_0.788\|GO:0009987_0.784\|GO:0050794_0.784\|GO:0005488_0.762\|GO:0005575_0.748\|GO:0110165_0.746\|GO:0005622_0.712\|GO:0008152_0.696\|GO:0019222_0.696\|GO:0031323_0.696\|GO:0044237_0.696\|GO:0043170_0.695\|GO:0044238_0.688\|GO:0080090_0.688\|GO:0060255_0.681\|GO:0009058_0.679\|GO:0009059_0.679\|GO:0044249_0.679\|GO:0010467_0.671\|GO:0009889_0.664\|GO:0010468_0.664\|GO:0010556_0.664\|GO:0031326_0.664\|GO:0048519_0.657\|GO:0003676_0.655\|GO:0097159_0.655\|GO:0006139_0.654\|GO:0090304_0.653\|GO:0016070_0.645\|GO:0048523_0.645\|GO:0019219_0.640\|GO:0051252_0.634\|GO:0048518_0.631\|GO:0003723_0.602\|GO:0009892_0.593\|GO:0003729_0.592\|GO:0003730_0.592\|GO:0009893_0.587\|GO:0031324_0.587\|GO:0010605_0.586\|GO:0009890_0.578\|GO:0031327_0.578\|GO:0010604_0.577\|GO:0010558_0.574\|GO:0045935_0.543\|GO:0051254_0.537\|GO:0043226_0.529\|GO:0032501_0.524\|GO:0005737_0.518\|GO:0065008_0.518\|GO:0009056_0.510\|GO:0009057_0.505\|GO:0009894_0.504\|GO:0043229_0.501	IPR000571+40-67_40-68_41-66_78-105_78-106_79-103+\|IPR036855+40-71_77-104+\|IPR045877+35-139+	SM00356+40-67_78-105+	PF00642+41-66_79-103+Zinc_finger_C-x8-C-x5-C-x3-H_type_(and_similar)	G3DSA:4.10.1000.10:FF:000018+73-106+Zinc_finger_protein	PTHR12547+35-139+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-146	1rgo_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.757	16874.250	9.037	9.500	27.397	15.068	48.630	51.370	17.808	9.589	44.521

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	red	red	99.234	15.832	52.160	37.788	109.428	141.833	527.967	30.325	0.000	90.898	51.941

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.487	1.118	—	1.504	0.388	1.906	-2.345	4.269	-7.292	6.097	—	—	—

No JSON data available for plots.

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