Hg_chrom3_TN10mRNA_5585
Organism: Heterodera glycines Gene Locus: chr3:6828904-6834579 Feature type: polypeptideProtein Sequence
Length: 547
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.68 | 1.36 | 0.598 | 0.82 | 0.457 | 0.797 | 0.74 | 1.28 | 1.463 | 1.828 | 0.388 | 1.721 | 1.32 | 0.633 | 1.418 | 1.41 | 0.809 | 1.302 | 0.984 | 0.807 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5303
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.639
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
KKRK,RRLPKIELVDSRRRVIR
|
— | — | — | — | — | — |
0.002
|
— | — |
0.092
|
0.113
|
0.005
|
0.164
|
0.195
|
0.192
|
0.155
|
0.004
|
0.807
|
0.081
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003583
|
2.000
|
1.000
|
Hsc_gene_5743.t1
|
Hsc_gene_5743.t1
|
— |
Q9VML9.4 Trissin receptor [Drosophila melanogaster]
|
KAF7638708.1 G_PROTEIN_RECEP_F1_2 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
GO:0008150_0.909|GO:0009987_0.844|GO:0005575_0.804|GO:0110165_0.800|GO:0065007_0.787|GO:0003674_0.756|GO:0050789_0.734|GO:0050896_0.717|GO:0050794_0.712|GO:0016020_0.699|GO:0007154_0.685|GO:0023052_0.685|GO:0051716_0.675|GO:0005886_0.671|GO:0071944_0.671|GO:0007165_0.632|GO:0060089_0.593|GO:0007186_0.590|GO:0038023_0.589|GO:0005488_0.576|GO:0004888_0.556|GO:0004930_0.502
|
IPR000276+62-86_77-430_95-116_143-165_149-165_179-200_237-260_368-392_412-438+|IPR017452+77-430+
|
— |
PF00001+77-430+7_transmembrane_receptor_(rhodopsin_family)
|
— |
PTHR24243+63-454+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
496-547
|
1.000
|
1-495
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.894
|
61024.250
|
9.738
|
26.000
|
18.099
|
11.335
|
41.865
|
58.135
|
12.066
|
6.033
|
50.274
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
374.454
|
730.384
|
617.298
|
738.177
|
343.416
|
182.733
|
199.016
|
465.685
|
86.879
|
344.311
|
233.983
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.473
|
-0.122
|
0.367
|
-1.134
|
-0.896
|
— |
1.247
|
-1.085
|
— | — | — | — | — |
No JSON data available for plots.