Hg_chrom3_TN10mRNA_5587
Organism: Heterodera glycines Gene Locus: chr3:6838982-6841859 Feature type: polypeptideProtein Sequence
Length: 579
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.064 | 1.245 | 0.973 | 0.476 | 1.094 | 0.576 | 1.172 | 0.864 | 1.382 | 1.237 | 0.942 | 1.727 | 1.631 | 0.864 | 0.916 | 0.765 | 0.878 | 0.864 | 0.531 | 0.559 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5305
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.793
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.273
|
— | — |
0.141
|
0.175
|
0.018
|
0.310
|
0.789
|
0.376
|
0.532
|
0.012
|
0.152
|
0.475
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007724
|
1.000
|
1.000
|
Hsc_gene_5745.t1
|
Hsc_gene_5745.t1
|
— |
O13755.1 Fumarate reductase [Schizosaccharomyces pombe 972h-]
|
KAI1706387.1 FAD binding domain-containing protein [Ditylenchus destructor]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0010181|GO:0016491
|
GO:0008150_0.849|GO:0005575_0.839|GO:0110165_0.824|GO:0016020_0.730|GO:0009987_0.713|GO:0003674_0.669|GO:0005622_0.644|GO:0005737_0.627|GO:0008152_0.602|GO:0043226_0.562|GO:0043229_0.550|GO:0043227_0.525|GO:0003824_0.524|GO:0044237_0.515|GO:0043231_0.514
|
IPR003953+73-533+|IPR010960+73-544+|IPR027477+320-488_323-492+|IPR036188+71-549_73-547+|IPR050315+57-549+
|
— |
PF00890+73-533+FAD_binding_domain
|
G3DSA:3.90.700.10:FF:000007+320-488+NADH-dependent_fumarate_reductase
|
PTHR43400+57-549+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
566-579
|
1.000
|
1-565
|
3sfe_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.712
|
63061.210
|
6.204
|
-2.000
|
24.352
|
10.190
|
42.660
|
57.340
|
12.435
|
11.917
|
51.986
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
1996.430
|
2120.075
|
2276.481
|
2230.757
|
2425.030
|
2351.802
|
2272.603
|
1868.350
|
2456.883
|
1062.307
|
1659.983
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.127
|
— | — |
0.089
|
— | — |
-0.437
|
0.426
|
— | — | — | — | — |
No JSON data available for plots.