Hg_chrom3_TN10mRNA_5590
Organism: Heterodera glycines Gene Locus: chr3:6849200-6856802 Feature type: polypeptideProtein Sequence
Length: 1,541
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.687 | 1.373 | 0.956 | 0.627 | 1.19 | 1.348 | 0.448 | 1.655 | 1.572 | 1.5 | 0.541 | 1.26 | 1.172 | 1.036 | 1.324 | 1.363 | 0.787 | 0.56 | 0.599 | 0.84 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5308
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.965
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.803
|
0.083
|
0.008
|
0.283
|
0.064
|
0.136
|
0.072
|
0.050
|
0.094
|
0.007
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007727
|
1.000
|
1.000
|
Hsc_gene_5748.t1
|
Hsc_gene_5748.t1
|
— |
Q9Y4B6.3 DDB1- and CUL4-associated factor 1 [Homo sapiens]
|
KAF7636526.1 LisH domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0016567
|
GO:0008150_0.975|GO:0009987_0.851|GO:0032502_0.811|GO:0048856_0.811|GO:0032501_0.804|GO:0007275_0.772|GO:0005575_0.633|GO:0110165_0.631|GO:0065007_0.610|GO:0050789_0.603|GO:0005622_0.570|GO:0016020_0.568|GO:0008152_0.552|GO:0043170_0.552|GO:0044238_0.537|GO:0043226_0.514|GO:0006139_0.504
|
IPR006594+913-945+|IPR015943+1131-1454+|IPR016024+102-504+|IPR033270+20-954+|IPR036322+1133-1366+
|
SM00667+913-945+
|
— | — |
PTHR13129+20-954+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-18;212-300;1435-1541
|
2.000
|
19-211;301-1434
|
4pxw_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.623
|
175620.800
|
6.168
|
-10.500
|
25.762
|
11.162
|
51.265
|
48.735
|
13.368
|
12.395
|
46.074
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
2646.811
|
3060.144
|
2174.282
|
2300.442
|
2715.220
|
2637.196
|
2128.018
|
2470.084
|
2074.098
|
3467.204
|
2870.159
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.722
|
-0.549
|
0.190
|
0.207
|
— |
-0.300
|
-0.200
|
— | — | — | — | — | — |
No JSON data available for plots.