SCN Proteipedia

Hg_chrom3_TN10mRNA_5594

Organism: Heterodera glycines Gene Locus: chr3:6866278-6873610 Feature type: polypeptide

Protein Sequence

Length: 1,513

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.807	0.953	0.925	0.365	1.377	1.203	0.795	1.421	0.911	1.179	0.791	0.972	1.138	0.915	1.686	1.473	0.791	0.911	0.61	0.467	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5312	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	2.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	RHRR,PGTKRKV,RKNSLEPSRCSKRRES,RRHFANASVKERREDKLRK,KRLKDLSGEFVIEVRRKA.	—	—	—	—	—	—	0.000	—	—	0.256	0.132	0.021	0.605	0.176	0.159	0.158	0.023	0.531	0.055

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003602	1.000	2.000	Hsc_gene_5752.t1;Hsc_gene_5752.t2	Hsc_gene_5752.t1;Hsc_gene_5752.t2	—	—	KAI1711091.1 PDZ domain (Also known as DHR or GLGF) domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0005856	GO:0005575_0.908\|GO:0110165_0.883\|GO:0008150_0.771\|GO:0016020_0.733\|GO:0005622_0.688\|GO:0009987_0.648\|GO:0043226_0.538\|GO:0071944_0.515\|GO:0005737_0.512\|GO:0043229_0.508	IPR000299+504-839+\|IPR001478+935-1018_936-1014_936-1015_944-1018_1341-1417_1430-1510_1430-1513_1431-1487_1439-1513+\|IPR011993+728-841+\|IPR014352+611-724+\|IPR018979+508-570+\|IPR018980+754-843_757-840+\|IPR019748+618-733_625-723+\|IPR019749+500-733+\|IPR029071+504-614+\|IPR035963+609-728+\|IPR036034+926-1022_929-1022_1312-1421_1338-1415_1419-1512_1422-1513+\|IPR052074+1423-1512+	SM00228+944-1018_1341-1417_1439-1513+\|SM00295+500-733+\|SM01196+754-843+	PF00373+618-733+FERM_central_domain\|PF00595+936-1014_1431-1487+PDZ_domain\|PF09379+508-570+FERM_N-terminal_domain\|PF09380+757-840+FERM_C-terminal_PH-like_domain	—	PTHR46900+1423-1512+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	185-469;857-900;1023-1219	4.000	1-184;470-856;901-1022;1220-1513	6x1r_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.808	169099.800	7.852	23.500	29.676	9.319	53.602	46.398	16.325	13.351	49.769

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	2014.583	3987.910	2431.320	2219.205	2048.388	2057.971	2265.602	2452.793	1842.258	883.411	1294.346

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.944	-0.983	—	-0.147	—	0.149	—	—	—	—	—	—	—

No JSON data available for plots.

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