Hg_chrom3_TN10mRNA_5595
Organism: Heterodera glycines Gene Locus: chr3:6873809-6875156 Feature type: polypeptideProtein Sequence
Length: 222
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.838 | 0.629 | 0.737 | 0.777 | 1.201 | 0.578 | 0.804 | 1.802 | 0.901 | 1.217 | 1.024 | 1.59 | 1.251 | 0.693 | 1.563 | 1.223 | 1.182 | 1.092 | 1.386 | 0.265 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5313
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
0.981
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRRK,RKAREWGTVWVVTSRWLRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.813
|
0.241
|
0.017
|
0.365
|
0.029
|
0.061
|
0.029
|
0.012
|
0.093
|
0.213
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007730
|
1.000
|
1.000
|
Hsc_gene_5753.t1
|
Hsc_gene_5753.t1
|
— | — |
CDJ90994.1 BRCT domain containing protein [Haemonchus contortus]
|
No
|
0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.917|GO:0009987_0.849|GO:0003674_0.833|GO:0005575_0.773|GO:0110165_0.771|GO:0005488_0.769|GO:0005622_0.705|GO:0016020_0.681|GO:0065007_0.665|GO:0050789_0.657|GO:0043226_0.653|GO:0043229_0.644|GO:0050794_0.638|GO:0043227_0.611|GO:0043231_0.601|GO:0051179_0.601|GO:0008152_0.588|GO:0044238_0.570|GO:0043170_0.553|GO:0050896_0.538|GO:0005515_0.520|GO:0051641_0.515|GO:0051716_0.510|GO:0005634_0.506
|
IPR001357+13-87_15-93_21-85_112-202_114-192_121-184+|IPR036420+12-96_16-114_111-203_115-209+
|
SM00292+15-93_114-192+
|
PF12738+21-85_121-184+twin_BRCT_domain
|
G3DSA:3.40.50.10190:FF:000010+117-210+DNA_topoisomerase_II_binding_protein_1
|
PTHR13561+17-210+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-222
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.832
|
24875.570
|
9.597
|
11.000
|
29.279
|
10.811
|
50.000
|
50.000
|
18.018
|
11.261
|
49.550
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
964.752
|
763.243
|
1043.828
|
935.407
|
913.771
|
943.897
|
792.651
|
939.569
|
605.453
|
1392.060
|
1054.943
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.223
|
0.156
|
— | — | — |
-0.242
|
— | — | — | — | — | — | — |
No JSON data available for plots.