Hg_chrom3_TN10mRNA_5598
Organism: Heterodera glycines Gene Locus: chr3:6884167-6885139 Feature type: polypeptideProtein Sequence
Length: 136
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.282 | 0.855 | 0.936 | 0.761 | 0.613 | 0.754 | 1.138 | 1.471 | 0.98 | 1.391 | 0.557 | 1.73 | 2.859 | 0.283 | 0.45 | 0.42 | 0.844 | 1.114 | 4.525 | 0.649 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5316
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.907
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.238
|
0.218
|
0.027
|
0.117
|
0.410
|
0.424
|
0.494
|
0.008
|
0.551
|
0.101
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007733
|
1.000
|
1.000
|
Hsc_gene_5756.t1
|
— | — |
O95807.1 Transmembrane protein 50A [Homo sapiens]
|
KAI1713933.1 transmembrane protein 50A [Ditylenchus destructor];KAI1717786.1 transmembrane protein 50A [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.885|GO:0110165_0.885|GO:0071944_0.852|GO:0005886_0.835|GO:0016020_0.835|GO:0005622_0.794|GO:0005737_0.794|GO:0005773_0.534|GO:0043226_0.534|GO:0043227_0.534|GO:0043229_0.534|GO:0043231_0.534
|
IPR007919+11-52_56-133_56-135+
|
— |
PF05255+11-52_56-135+Uncharacterised_protein_family_(UPF0220)
|
— |
PTHR13180+56-133+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-136
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.677
|
15396.800
|
5.499
|
-2.000
|
17.647
|
21.324
|
32.353
|
67.647
|
8.824
|
8.824
|
48.529
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
yellow
|
1749.560
|
1471.937
|
1629.209
|
1518.291
|
1842.359
|
2247.012
|
1473.273
|
2690.326
|
1011.664
|
2068.426
|
1615.528
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.092
|
— |
0.247
|
0.302
|
-0.600
|
— |
-0.728
|
— | — | — | — | — |
No JSON data available for plots.