Hg_chrom3_TN10mRNA_5599
Organism: Heterodera glycines Gene Locus: chr3:6885944-6886929 Feature type: polypeptideProtein Sequence
Length: 257
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.724 | 0.905 | 0.778 | 0.134 | 0.649 | 0.599 | 0.695 | 1.362 | 1.556 | 2.051 | 0.766 | 0.916 | 2.27 | 0.748 | 1.032 | 1.167 | 0.829 | 0.59 | 1.497 | 1.602 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5317
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.241
|
0.112
|
0.006
|
0.281
|
0.782
|
0.280
|
0.414
|
0.003
|
0.115
|
0.099
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007734
|
1.000
|
1.000
|
Hsc_gene_5757.t1
|
Hsc_gene_5757.t1
|
— |
O35790.1 N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase [Rattus norvegicus]
|
KAI1711093.1 glcNAc-PI de-N-acetylase domain-containing protein [Ditylenchus destructor]
|
No
|
0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.900|GO:0110165_0.900|GO:0016020_0.864|GO:0071944_0.786|GO:0005886_0.780|GO:0005622_0.728|GO:0005737_0.728|GO:0043226_0.710|GO:0043229_0.700|GO:0043227_0.697|GO:0043231_0.689|GO:0003674_0.642|GO:0005773_0.622|GO:0012505_0.600|GO:0008150_0.598|GO:0003824_0.548|GO:0005783_0.534|GO:0009987_0.530
|
IPR003737+15-246_40-162+|IPR024078+14-246_37-248+
|
— |
PF02585+40-162+GlcNAc-PI_de-N-acetylase
|
— |
PTHR12993+15-246+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-257
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.793
|
29624.430
|
9.449
|
8.500
|
21.012
|
18.288
|
40.467
|
59.533
|
12.840
|
8.171
|
41.634
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkorange
|
230.645
|
316.700
|
269.667
|
184.014
|
150.478
|
181.911
|
121.481
|
257.349
|
262.933
|
256.274
|
259.128
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.461
|
-0.920
|
-0.443
|
-0.324
|
0.290
|
-0.573
|
0.396
|
-0.942
|
— | — | — | — | — |
No JSON data available for plots.