SCN Proteipedia

Hg_chrom3_TN10mRNA_5600

Organism: Heterodera glycines Gene Locus: chr3:6886909-6892860 Feature type: polypeptide

Protein Sequence

Length: 1,466

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.968	0.888	1.215	0.423	2.353	1.312	0.739	0.887	0.697	0.774	1.395	0.963	0.815	0.826	1.336	1.228	0.839	0.475	0.472	0.522	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5318	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRAKGGKAKGKKRTA,RRLIYALIKLREEKK,RRSARGIGFQGRRRSD,KKQMPEQTQKNAKKEAKR,KKAEILNKRKNEKEKKRGQ,RKVGRPPTKRAKGGKAKGK,KKRTAGGKGAKKAETRRLR,KRTAGGKGAKKAETRRLRL,KKVSEDERKKKEAADRMKR,RKSKKKAMKMVMSRTREKR,KKKAMKMVMSRTREKRRAE,KKKGIVGKRIGRAKKRKRQ,KKGIVGKRIGRAKKRKRQM,GKKESRTNRKAVSKKGLSKNKTQPKKSDVSPKQTKPK	—	—	—	—	—	—	0.000	—	—	0.974	0.012	0.069	0.178	0.054	0.024	0.029	0.007	0.065	0.008

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007735	1.000	1.000	Hsc_gene_5758.t1	—	—	Q96T23.2 Remodeling and spacing factor 1 [Homo sapiens]	KAI3415755.1 respiration factor rsf1 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0006355\|GO:0031213	GO:0008150_0.918\|GO:0005575_0.896\|GO:0110165_0.893\|GO:0009987_0.861\|GO:0005622_0.849\|GO:0016020_0.827\|GO:0043226_0.808\|GO:0043229_0.782\|GO:0065007_0.752\|GO:0050789_0.741\|GO:0043227_0.728\|GO:0003674_0.686\|GO:0043231_0.675\|GO:0008152_0.674\|GO:0043170_0.674\|GO:0005634_0.669\|GO:0050794_0.667\|GO:0071840_0.658\|GO:0016043_0.653\|GO:0009058_0.633\|GO:0009059_0.633\|GO:0044237_0.633\|GO:0044249_0.633\|GO:0005488_0.628\|GO:0019222_0.624\|GO:0044238_0.611\|GO:0060255_0.605\|GO:0006139_0.576\|GO:0034654_0.568\|GO:0090304_0.567\|GO:0141187_0.559\|GO:0080090_0.553\|GO:0010467_0.552\|GO:0043228_0.538\|GO:0043232_0.538\|GO:0006325_0.530\|GO:0006338_0.529\|GO:0005515_0.525\|GO:0031323_0.524\|GO:0019219_0.511\|GO:0009889_0.503	IPR001965+650-696+\|IPR011011+647-701+\|IPR013083+584-703+\|IPR019786+651-695+\|IPR019787+648-698_651-695+\|IPR028938+97-1360+	SM00249+650-696+	PF00628+651-695+PHD-finger	—	PTHR14296+97-1360+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-94;287-647;754-1328;1433-1466	3.000	95-286;648-753;1329-1432	6fi1_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.634	164945.850	4.767	-61.000	38.336	7.094	60.982	39.018	17.531	20.805	47.408

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	grey	3267.375	4040.189	3376.704	3292.709	3158.235	2825.290	3184.101	2514.097	4202.287	2746.302	3370.296

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.490	-0.432	—	-0.092	-0.146	0.183	-0.274	0.484	—	—	—	—	—

No JSON data available for plots.

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