Hg_chrom3_TN10mRNA_5601
Organism: Heterodera glycines Gene Locus: chr3:6893525-6902349 Feature type: polypeptideProtein Sequence
Length: 968
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.649 | 1.057 | 0.958 | 0.997 | 0.913 | 1.298 | 0.578 | 1.55 | 1.033 | 1.34 | 0.61 | 1.762 | 1.55 | 1.212 | 1.138 | 1.461 | 0.847 | 0.845 | 0.715 | 0.668 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5319
|
— |
Hg_chrom3_TN10gene_5319
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.974
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.522
|
0.150
|
0.007
|
0.512
|
0.111
|
0.355
|
0.158
|
0.150
|
0.182
|
0.018
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007736
|
1.000
|
1.000
|
Hsc_gene_5759.t1
|
Hsc_gene_5759.t1
|
— |
O94967.1 WD repeat-containing protein 47 [Homo sapiens]
|
KAI1730703.1 WD repeat-containing protein 47 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.905|GO:0005575_0.891|GO:0110165_0.891|GO:0009987_0.819|GO:0005622_0.757|GO:0065007_0.687|GO:0016020_0.683|GO:0050789_0.672|GO:0050794_0.659|GO:0043226_0.651|GO:0043229_0.630|GO:0050896_0.599|GO:0008152_0.542|GO:0005737_0.537|GO:0044237_0.520
|
IPR001680+628-666_688-727_695-725_696-725_736-786_789-828_792-828_796-837_835-874_842-883_843-874_877-916_879-914_884-918_923-962_930-968_932-962+|IPR006595+48-105+|IPR015943+621-842_843-967+|IPR036322+626-962+|IPR040067+4-963+
|
SM00320+628-666_688-727_736-786_789-828_835-874_877-916_923-962+|SM00668+48-105+
|
PF00400+696-725_792-828_843-874_879-914_932-962+WD_domain,_G-beta_repeat
|
— |
PTHR19863+4-963+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
324-473
|
2.000
|
1-323;474-968
|
7wej_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.744
|
108911.020
|
6.713
|
4.000
|
23.450
|
11.880
|
48.450
|
51.550
|
12.707
|
10.744
|
50.413
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
1807.086
|
1855.191
|
2398.369
|
1823.732
|
1500.198
|
1305.354
|
1877.547
|
1946.575
|
1106.104
|
2311.311
|
1794.794
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.141
|
-0.162
|
-0.287
|
-0.313
|
-0.186
|
0.534
|
0.470
|
— | — | — | — | — | — |
No JSON data available for plots.