Hg_chrom3_TN10mRNA_5603
Organism: Heterodera glycines Gene Locus: chr3:6902501-6903152 Feature type: polypeptideProtein Sequence
Length: 158
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.662 | 0.736 | 0.806 | 1.746 | 1.688 | 1.136 | 0.753 | 0.949 | 1.125 | 1.625 | 0.959 | 1.862 | 1.758 | 0.243 | 1.033 | 0.723 | 1.141 | 0.671 | 0.974 | 0.558 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5321
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.926
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
endoplasmic_reticulum
|
— | — | — | — | — | — |
1-21
|
0.907
|
1.000
|
0.000
|
0.000
|
0.299
|
0.334
|
0.082
|
0.302
|
0.607
|
0.205
|
0.218
|
0.006
|
0.469
|
0.418
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007737
|
1.000
|
1.000
|
Hsc_gene_5760.t1
|
Hsc_gene_5760.t1
|
— |
Q802F3.2 Selenoprotein F [Danio rerio]
|
KAI1706409.1 sep15/SelM redox domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.934|GO:0009987_0.882|GO:0008152_0.766|GO:0044237_0.749|GO:0043170_0.748|GO:0044238_0.748|GO:0009058_0.743|GO:0019538_0.738|GO:0009059_0.730|GO:0044249_0.730|GO:0010467_0.723|GO:0051604_0.684|GO:0006457_0.677|GO:0006458_0.670|GO:0051084_0.670|GO:0005575_0.551|GO:0110165_0.548
|
IPR014912+84-152+|IPR036249+67-154+|IPR038219+80-155+|IPR039992+19-153+
|
— |
PF08806+84-152+Sep15/SelM_redox_domain
|
— |
PTHR13077+19-153+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-158
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.748
|
18076.850
|
5.050
|
-3.500
|
27.848
|
11.392
|
47.468
|
52.532
|
13.291
|
14.557
|
42.405
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
537.948
|
330.265
|
578.777
|
679.304
|
748.826
|
592.672
|
546.581
|
553.554
|
144.569
|
733.854
|
481.303
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.580
|
0.903
|
0.340
|
— |
-0.323
|
— | — | — | — | — | — | — | — |