Hg_chrom3_TN10mRNA_5607
Organism: Heterodera glycines Gene Locus: chr3:6912184-6916944 Feature type: polypeptideProtein Sequence
Length: 751
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.836 | 1.548 | 1.089 | 0.964 | 0.888 | 1.058 | 0.491 | 1.465 | 1.065 | 1.476 | 0.706 | 1.175 | 1.11 | 0.768 | 1.005 | 1.921 | 0.808 | 0.666 | 0.615 | 0.587 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5325
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.904
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— |
KRRS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.527
|
0.073
|
0.007
|
0.638
|
0.082
|
0.209
|
0.184
|
0.183
|
0.130
|
0.041
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007740
|
1.000
|
1.000
|
Hsc_gene_5764.t1
|
Hsc_gene_5764.t1
|
— |
Q9Z2K5.2 Target of rapamycin complex subunit LST8 [Rattus norvegicus]
|
KAI3415761.1 Katanin p80 WD40 repeat-containing subunit B1 [Globodera pallida]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0008017
|
GO:0005575_0.875|GO:0110165_0.849|GO:0008150_0.826|GO:0005622_0.776|GO:0009987_0.752|GO:0016020_0.652|GO:0043226_0.652|GO:0065007_0.632|GO:0043229_0.624|GO:0050789_0.621|GO:0050794_0.604|GO:0043227_0.547|GO:0043231_0.511
|
IPR001680+97-137_99-137_104-140_141-177_181-218_194-218_195-227+|IPR015943+41-273+|IPR019775+124-138_205-219+|IPR028021+614-719+|IPR036322+69-253+
|
SM00320+97-137_141-177_181-218+
|
PF00400+99-137_194-218+WD_domain,_G-beta_repeat|PF13925+614-719+con80_domain_of_Katanin
|
— |
PTHR19845+72-554+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
368-515
|
2.000
|
1-367;516-751
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.777
|
83115.360
|
6.354
|
-2.000
|
23.835
|
9.720
|
52.996
|
47.004
|
12.517
|
11.318
|
53.529
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
violet
|
1176.619
|
1131.731
|
754.331
|
755.592
|
921.623
|
1257.930
|
1720.218
|
1169.355
|
844.130
|
1623.067
|
1289.237
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.815
|
-0.720
|
0.111
|
0.255
|
0.463
|
0.461
|
— |
0.699
|
— | — | — | — | — |
No JSON data available for plots.