Hg_chrom3_TN10mRNA_5609
Organism: Heterodera glycines Gene Locus: chr3:6919889-6921467 Feature type: polypeptideProtein Sequence
Length: 431
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.701 | 1.133 | 0.928 | 0.56 | 1.121 | 1.666 | 0.166 | 1.276 | 1.341 | 1.003 | 1.723 | 1.228 | 0.773 | 1.115 | 1.089 | 1.359 | 1.293 | 0.598 | 0.357 | 0.751 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5327
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.688
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRIR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.943
|
0.065
|
0.002
|
0.290
|
0.022
|
0.046
|
0.037
|
0.016
|
0.043
|
0.020
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007741
|
1.000
|
1.000
|
Hsc_gene_5765.t1
|
Hsc_gene_5765.t1;Hsc_gene_5765.t2
|
— | — |
KAF7640364.1 Occludin_ELL domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR010844+319-427_326-423+|IPR031176+188-425+
|
— |
PF07303+326-423+Occludin_homology_domain
|
— |
PTHR23288+188-425+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
129-325
|
2.000
|
1-128;326-431
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.743
|
49370.290
|
10.075
|
26.500
|
31.090
|
8.353
|
59.861
|
40.139
|
19.258
|
11.833
|
46.172
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
1035.085
|
970.196
|
954.425
|
843.412
|
962.100
|
1450.797
|
1231.402
|
1714.198
|
1218.483
|
567.187
|
846.314
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.253
|
-0.339
|
— |
0.158
|
0.607
|
-0.228
|
— |
-0.337
|
— | — | — | — | — |
No JSON data available for plots.