Hg_chrom3_TN10mRNA_5610
Organism: Heterodera glycines Gene Locus: chr3:6922232-6924193 Feature type: polypeptideProtein Sequence
Length: 113
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.235 | 1.235 | 0.965 | 2.441 | 1.18 | 0.908 | 0.211 | 2.212 | 1.377 | 0.598 | 0.67 | 1.562 | 0.983 | 0.17 | 1.264 | 1.138 | 0.87 | 1.073 | 4.084 | 0.26 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5328
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.920
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.789
|
0.107
|
0.006
|
0.447
|
0.143
|
0.083
|
0.222
|
0.008
|
0.036
|
0.051
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007742
|
1.000
|
1.000
|
Hsc_gene_5766.t1
|
Hsc_gene_5766.t1
|
— |
Q9W5E1.1 RING-box protein 1A [Drosophila melanogaster]
|
KAI3415764.1 RING-box protein 1A [Globodera pallida]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008270
|
GO:0008150_0.882|GO:0005575_0.787|GO:0110165_0.733|GO:0009987_0.715|GO:0003674_0.709|GO:0065007_0.647|GO:0050789_0.635|GO:0050794_0.610|GO:0005622_0.601|GO:0008152_0.561|GO:0043170_0.557|GO:0050896_0.557|GO:0019538_0.551|GO:0044238_0.551|GO:0005488_0.527|GO:0032991_0.525|GO:0051716_0.517|GO:0016020_0.513|GO:0005515_0.510
|
IPR001841+58-103+|IPR013083+14-113+|IPR024766+45-103+|IPR051031+19-109+
|
— |
PF12678+45-103+RING-H2_zinc_finger_domain
|
G3DSA:3.30.40.10:FF:000010+13-113+E3_ubiquitin-protein_ligase_RBX1
|
PTHR11210+19-109+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1
|
1.000
|
2-113
|
8h3f_R
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.659
|
13051.830
|
6.612
|
0.500
|
27.434
|
14.159
|
49.558
|
50.442
|
15.044
|
12.389
|
51.327
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
pink
|
1519.920
|
1473.926
|
1087.843
|
1377.232
|
1629.703
|
1486.013
|
1074.254
|
1255.766
|
1200.261
|
2230.181
|
1788.787
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.667
|
-0.235
|
0.449
|
0.211
|
— |
-0.459
|
-0.347
|
— | — | — | — | — | — |
No JSON data available for plots.