Hg_chrom3_TN10mRNA_5611
Organism: Heterodera glycines Gene Locus: chr3:6924360-6924742 Feature type: polypeptideProtein Sequence
Length: 78
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.298 | 0.894 | 1.166 | 1.768 | 0.427 | 0.986 | 0.763 | 0.641 | 1.425 | 1.559 | 1.36 | 0.754 | 1.068 | 0.74 | 1.57 | 0.916 | 1.261 | 1.554 | 0.0 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5329
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.389
|
0.308
|
0.034
|
0.506
|
0.320
|
0.065
|
0.046
|
0.058
|
0.048
|
0.114
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
Q6PBK3.1 Small ribosomal subunit protein eS28 [Danio rerio]
|
KAH7701874.1 40S ribosomal protein S28-like protein [Aphelenchus avenae];KAH7725346.1 40S ribosomal protein S28-like protein [Aphelenchus avenae];KAH7731662.1 40S ribosomal protein S28-like protein [Aphelenchus avenae]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.919|GO:0110165_0.916|GO:0005622_0.743|GO:0005737_0.697|GO:0043226_0.683|GO:0043229_0.671|GO:0003674_0.604|GO:0008150_0.561|GO:0005829_0.540|GO:0043228_0.537|GO:0043232_0.537
|
IPR000289+1-57_4-55_6-55+|IPR012340+1-61_2-57+
|
— |
PF01200+4-55+Ribosomal_protein_S28e
|
— |
PTHR10769+1-57+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-78
|
7oyc_c2
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.512
|
8673.240
|
10.065
|
6.500
|
26.923
|
5.128
|
48.718
|
51.282
|
17.949
|
8.974
|
52.564
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
yellow
|
2734.910
|
2430.593
|
3425.178
|
4979.307
|
5354.364
|
5213.306
|
2159.122
|
1643.505
|
2741.387
|
457.177
|
1436.124
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.263
|
0.898
|
0.651
|
— | — |
-1.262
|
-1.772
|
0.536
|
2.464
|
— |
3.659
|
— | — |
No JSON data available for plots.