Hg_chrom3_TN10mRNA_5612
Organism: Heterodera glycines Gene Locus: chr3:6924803-6927015 Feature type: polypeptideProtein Sequence
Length: 396
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.881 | 1.644 | 0.735 | 0.522 | 1.052 | 0.777 | 0.842 | 1.515 | 1.964 | 1.16 | 0.689 | 1.04 | 1.122 | 0.874 | 1.134 | 1.01 | 0.911 | 0.918 | 0.0 | 1.114 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5330
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
25-45
|
0.986
|
1-32
|
0.999
|
— | — |
0.006
|
— | — |
0.098
|
0.952
|
0.017
|
0.258
|
0.025
|
0.066
|
0.086
|
0.035
|
0.033
|
0.018
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007743
|
1.000
|
1.000
|
Hsc_gene_5767.t1
|
Hsc_gene_5767.t1
|
— |
P41565.2 Isocitrate dehydrogenase [NAD] subunit gamma 1, mitochondrial [Rattus norvegicus]
|
KAF7636465.1 Isocitrate dehydrogenase [NAD] subunit, mitochondrial [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000287|GO:0006099|GO:0016616|GO:0051287
|
GO:0005575_0.791|GO:0110165_0.787|GO:0008150_0.728|GO:0005622_0.722|GO:0005737_0.685|GO:0009987_0.654|GO:0016020_0.653|GO:0043226_0.620|GO:0043229_0.604|GO:0008152_0.592|GO:0003674_0.588|GO:0043227_0.582|GO:0044237_0.565|GO:0043231_0.564|GO:0044238_0.533
|
IPR004434+53-388+|IPR019818+280-299+|IPR024084+57-382_57-385+
|
SM01329+57-385+
|
PF00180+57-382+Isocitrate/isopropylmalate_dehydrogenase
|
G3DSA:3.40.718.10:FF:000001+42-392+Isocitrate_dehydrogenase_[NAD]_subunit,_mitochondrial
|
PTHR11835+52-388+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-396
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.786
|
43875.990
|
7.277
|
5.000
|
23.485
|
10.859
|
46.212
|
53.788
|
13.131
|
10.354
|
50.505
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
darkturquoise
|
1463.221
|
847.927
|
1631.590
|
1349.032
|
1731.797
|
1638.157
|
1541.545
|
2438.932
|
1625.120
|
990.633
|
1262.556
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.715
|
0.533
|
-0.166
|
0.328
|
— | — |
0.469
|
-0.519
|
— | — | — | — | — |
No JSON data available for plots.