SCN Proteipedia

Hg_chrom3_TN10mRNA_5613

Organism: Heterodera glycines Gene Locus: chr3:6927136-6929187 Feature type: polypeptide

Protein Sequence

Length: 411

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.594	1.075	0.841	2.433	0.892	1.435	0.666	3.65	0.649	1.249	0.885	1.002	1.69	0.515	1.192	1.078	0.439	0.958	0.936	0.787	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5331	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Not_Clustered	0.864

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.760	0.073	0.036	0.401	0.031	0.046	0.032	0.018	0.072	0.011

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003604	1.000	2.000	Hsc_gene_5768.t1;Hsc_gene_5768.t2	Hsc_gene_5768.t1	—	—	KAI1711088.1 histone H4 transcription factor [Ditylenchus destructor]	No	-0.320

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	Yes	—	GO:0008150_0.839\|GO:0009987_0.797\|GO:0005575_0.755\|GO:0110165_0.755\|GO:0005622_0.727\|GO:0065007_0.706\|GO:0050789_0.702\|GO:0050794_0.686\|GO:0003674_0.677\|GO:0005488_0.640\|GO:0008152_0.640\|GO:0043170_0.635\|GO:0044238_0.629\|GO:0019222_0.625\|GO:0044237_0.615\|GO:0060255_0.615\|GO:0009058_0.614\|GO:0009059_0.614\|GO:0044249_0.614\|GO:0031323_0.611\|GO:0010467_0.601\|GO:0080090_0.600\|GO:0043226_0.597\|GO:0043229_0.588\|GO:0009889_0.587\|GO:0031326_0.587\|GO:0010468_0.585\|GO:0010556_0.585\|GO:0016020_0.582\|GO:0006139_0.579\|GO:0090304_0.574\|GO:0016070_0.570\|GO:0034654_0.569\|GO:0043227_0.566\|GO:0141187_0.566\|GO:0032774_0.563\|GO:0043231_0.545\|GO:0019219_0.544\|GO:0051252_0.544\|GO:0006351_0.541\|GO:0006355_0.539\|GO:0032501_0.539\|GO:2001141_0.539\|GO:0005634_0.525\|GO:0032502_0.513\|GO:0048856_0.512	IPR013087+36-60_38-60_72-96_74-96_135-159_174-198_174-203_176-198_204-224_233-255_233-260_235-255_259-282_288-310_288-315_289-310_316-338_316-343_318-338_347-370_347-375_349-371+\|IPR036236+184-242_242-297_286-338_346-371+	SM00355+36-60_72-96_135-159_174-198_204-224_233-255_259-282_288-310_316-338_347-370+	PF00096+288-310_316-338+Zinc_finger,_C2H2_type	G3DSA:3.30.160.60:FF:000065+315-339+B-cell_CLL/lymphoma_6,_member_B	PTHR24379+260-370+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-411	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.742	47334.050	8.005	22.000	28.954	17.275	49.392	50.608	18.978	9.976	46.229

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	paleturquoise	616.535	660.738	595.355	607.356	576.758	563.434	893.191	752.793	484.274	590.527	544.990

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.381	-0.259	0.138	—	—	0.675	0.312	0.390	—	—	—	—	—

No JSON data available for plots.

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